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The ability to handle large scale graph data is crucial to an increasing number of applications. Much work has been dedicated to supporting basic graph operations such as subgraph matching, reachability, regular expression matching, etc. In…

Databases · Computer Science 2012-05-31 Zhao Sun , Hongzhi Wang , Haixun Wang , Bin Shao , Jianzhong Li

Graph embedding techniques are pivotal in real-world machine learning tasks that operate on graph-structured data, such as social recommendation and protein structure modeling. Embeddings are mostly performed on the node level for learning…

Machine Learning · Computer Science 2022-04-26 Nan Wang , Lu Lin , Jundong Li , Hongning Wang

We study a well known noisy model of the graph isomorphism problem. In this model, the goal is to perfectly recover the vertex correspondence between two edge-correlated Erd\H{o}s-R\'{e}nyi random graphs, with an initial seed set of…

Machine Learning · Computer Science 2018-07-27 Elchanan Mossel , Jiaming Xu

Subgraph representation learning has emerged as an important problem, but it is by default approached with specialized graph neural networks on a large global graph. These models demand extensive memory and computational resources but…

Machine Learning · Computer Science 2024-05-24 Dongkwan Kim , Alice Oh

Graph isomorphism is an important problem as its worst-case time complexity is not yet fully understood. In this study, we try to draw parallels between a related optimization problem called point set registration. A graph can be…

Optimization and Control · Mathematics 2021-11-19 Yigit Oktar

A large number of applications such as querying sensor networks, and analyzing protein-protein interaction (PPI) networks, rely on mining uncertain graph and hypergraph databases. In this work we study the following problem: given an…

Data Structures and Algorithms · Computer Science 2018-01-11 Charalampos E. Tsourakakis , Shreyas Sekar , Johnson Lam , Liu Yang

We associate all small subgraph counting problems with a systematic graph encoding/representation system which makes a coherent use of graphlet structures. The system can serve as a unified foundation for studying and connecting many…

Discrete Mathematics · Computer Science 2021-03-22 Dimitris Floros , Nikos Pitsianis , Xiaobai Sun

We propose a new approach, the calibrated nonparametric scan statistic (CNSS), for more accurate detection of anomalous patterns in large-scale, real-world graphs. Scan statistics identify connected subgraphs that are interesting or…

Methodology · Statistics 2022-06-28 Chunpai Wang , Daniel B. Neill , Feng Chen

Graph Neural Networks (GNNs) have been highly successful for the node classification task. GNNs typically assume graphs are homophilic, i.e. neighboring nodes are likely to belong to the same class. However, a number of real-world graphs…

Machine Learning · Computer Science 2024-09-20 Yurui Lai , Taiyan Zhang , Rui Fan

Recent papers have formulated the problem of learning graphs from data as an inverse covariance estimation with graph Laplacian constraints. While such problems are convex, existing methods cannot guarantee that solutions will have specific…

Machine Learning · Statistics 2018-05-09 Eduardo Pavez , Hilmi E. Egilmez , Antonio Ortega

Subgraph GNNs enhance message-passing GNNs expressivity by representing graphs as sets of subgraphs, demonstrating impressive performance across various tasks. However, their scalability is hindered by the need to process large numbers of…

Machine Learning · Computer Science 2025-06-02 Guy Bar-Shalom , Yam Eitan , Fabrizio Frasca , Haggai Maron

The subgraph-subgraph matching problem is, given a pair of graphs and a positive integer $K$, to find $K$ vertices in the first graph, $K$ vertices in the second graph, and a bijection between them, so as to minimize the number of adjacency…

Optimization and Control · Mathematics 2025-08-08 Lingyao Meng , Mengqi Lou , Jianyu Lin , Vince Lyzinski , Donniell E. Fishkind

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…

Signal Processing · Electrical Eng. & Systems 2025-12-12 Gonzalo Mateos , Yanning Shen , Georgios B. Giannakis , Ananthram Swami

Graph connectivity is a fundamental combinatorial optimization problem that arises in many practical applications, where usually a spanning subgraph of a network is used for its operation. However, in the real world, links may fail…

Data Structures and Algorithms · Computer Science 2022-09-13 Dimitris Fotakis , Evangelia Gergatsouli , Charilaos Pipis , Miltiadis Stouras , Christos Tzamos

Network reliability is an important metric to evaluate the connectivity among given vertices in uncertain graphs. Since the network reliability problem is known as #P-complete, existing studies have used approximation techniques. In this…

Data Structures and Algorithms · Computer Science 2020-09-08 Yuya Sasaki , Yasuhiro Fujiwara , Makoto Onizuka

Graph alignment - identifying node correspondences between two graphs - is a fundamental problem with applications in network analysis, biology, and privacy research. While substantial progress has been made in aligning correlated…

Information Theory · Computer Science 2026-03-16 Jakob Maier , Laurent Massoulié

We propose a weighted common subgraph (WCS) matching algorithm to find the most similar subgraphs in two labeled weighted graphs. WCS matching, as a natural generalization of the equal-sized graph matching or subgraph matching, finds wide…

Data Structures and Algorithms · Computer Science 2014-11-05 Xu Yang , Hong Qiao , Zhi-Yong Liu

Graph classification is a pivotal challenge in machine learning, especially within the realm of graph-based data, given its importance in numerous real-world applications such as social network analysis, recommendation systems, and…

Machine Learning · Computer Science 2024-07-03 Bowen Zhang , Zhichao Huang , Genan Dai , Guangning Xu , Xiaomao Fan , Hu Huang

Symmetry plays a major role in subgraph matching both in the description of the graphs in question and in how it confounds the search process. This work addresses how to quantify these effects and how to use symmetries to increase the…

Data Structures and Algorithms · Computer Science 2023-01-10 Dominic Yang , Yurun Ge , Thien Nguyen , Jacob Moorman , Denali Molitor , Andrea Bertozzi

Real-world graphs have inherently complex and diverse topological patterns, known as topological heterogeneity. Most existing works learn graph representation in a single constant curvature space that is insufficient to match the complex…

Machine Learning · Computer Science 2024-12-17 Zihao Guo , Qingyun Sun , Haonan Yuan , Xingcheng Fu , Min Zhou , Yisen Gao , Jianxin Li