Related papers: The trace reconstruction problem for spider graphs
Given natural limitations on the length DNA sequences, designing phylogenetic reconstruction methods which are reliable under limited information is a crucial endeavor. There have been two approaches to this problem: reconstructing partial…
Let $S$ be a string of length $n$ over an alphabet $\Sigma$ and let $Q$ be a subset of $\Sigma$ of size $q \geq 2$. The 'co-occurrence problem' is to construct a compact data structure that supports the following query: given an integer $w$…
The spectral theory of quantum graphs is related via an exact trace formula with the spectrum of the lengths of periodic orbits (cycles) on the graphs. The latter is a degenerate spectrum, and understanding its structure (i.e.,finding out…
Path partition problems on trees have found various applications. In this paper, we present an $O(n \log n)$ time algorithm for solving the following variant of path partition problem: given a rooted tree of $n$ nodes $1, \ldots, n$, where…
A graph spanner is a fundamental graph structure that faithfully preserves the pairwise distances in the input graph up to a small multiplicative stretch. The common objective in the computation of spanners is to achieve the best-known…
The problem of finding the degeneracy of a graph is a subproblem of the k-core decomposition problem. In this paper, we present a (1 + epsilon)-approximate solution to the degeneracy problem which runs in O(n log n) time, sublinear in the…
Consider a simple random walk on $\mathbb{Z}$ with a random coloring of $\mathbb{Z}$. Look at the sequence of the first $N$ steps taken in the random walk, together with the colors of the visited locations. We call this the record. From the…
We provide a rearrangement based algorithm for fast detection of subgraphs of $k$ vertices with long escape times for directed or undirected networks. Complementing other notions of densest subgraphs and graph cuts, our method is based on…
Motivated by the problem of routing reliably and scalably in a graph, we introduce the notion of a splicer, the union of spanning trees of a graph. We prove that for any bounded-degree n-vertex graph, the union of two random spanning trees…
We give a simple algorithm for maintaining a $n^{o(1)}$-approximate spanner $H$ of a graph $G$ with $n$ vertices as $G$ receives edge updates by reduction to the dynamic All-Pairs Shortest Paths (APSP) problem. Given an initially empty…
We prove that a graph with a cut vertex whose deletion produces at least five connected components must be missing a connected partition of some type. We prove that this also holds if there are four connected components that each have at…
In the graph stream model of computation, an algorithm processes the edges of an input graph in one or more sequential passes while using a memory sublinear in the input size. This model poses significant challenges for constructing long…
A curious property of randomized log-space search algorithms is that their outputs are often longer than their workspace. This leads to the question: how can we reproduce the results of a randomized log space computation without storing the…
We consider the problem of reconstructing graphs or labeled graphs from neighborhoods of a given radius r. Special instances of this problem include the well known: DNA shotgun assembly; the lesser-known: neural network reconstruction; and…
This paper considers the model problem of reconstructing an object from incomplete frequency samples. Consider a discrete-time signal $f \in \C^N$ and a randomly chosen set of frequencies $\Omega$ of mean size $\tau N$. Is it possible to…
We present improved algorithms for short cycle decomposition of a graph. Short cycle decompositions were introduced in the recent work of Chu et al, and were used to make progress on several questions in graph sparsification. For all…
We study the problem of cutting a length-$n$ string of positive real numbers into $k$ pieces so that every piece has sum at least $b$. The problem can also be phrased as transforming such a string into a new one by merging adjacent numbers.…
In the recent research of data mining, frequent structures in a sequence of graphs have been studied intensively, and one of the main concern is changing structures along a sequence of graphs that can capture dynamic properties of data. On…
Vertex deletion problems for graphs are studied intensely in classical and parameterized complexity theory. They ask whether we can delete at most k vertices from an input graph such that the resulting graph has a certain property.…
In the {claw, diamond}-free edge deletion problem, we are given a graph $G$ and an integer $k>0$, the question is whether there are at most $k$ edges whose deletion results in a graph without claws and diamonds as induced graphs. Based on…