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We derive a mesoscopic modeling and simulation technique that is very close to the technique known as dissipative particle dynamics. The model is derived from molecular dynamics by means of a systematic coarse-graining procedure. Thus the…

Soft Condensed Matter · Physics 2009-10-31 Eirik G. Flekkoy , Peter V. Coveney , Gianni De Fabritiis

This study proposes an innovative approach to analyze spatial patterns of behavior by integrating information in weighted Voronoi diagrams. The objective of the research is to analyze the temporal distribution of an experimental subject in…

The size distributions of 2D and 3D Voronoi cells and of cells of $V_p(2,3)$,--2D cut of 3D Voronoi diagram--are explored, with the single-parameter (re-scaled) gamma distribution playing a central role in the analytical fitting.…

Astrophysics · Physics 2011-09-20 Lorenzo Zaninetti

Given a countable set of points in a continuous space, Voronoi tessellation is an intuitive way of partitioning the space according to the distance to the individual points. As a powerful approach to obtain structural information, it has a…

Soft Condensed Matter · Physics 2020-02-17 Simeon Völkel , Kai Huang

We describe a new data structure for dynamic nearest neighbor queries in the plane with respect to a general family of distance functions. These include $L_p$-norms and additively weighted Euclidean distances. Our data structure supports…

Computational Geometry · Computer Science 2020-10-02 Haim Kaplan , Wolfgang Mulzer , Liam Roditty , Paul Seiferth , Micha Sharir

Angular Voronoi diagram was introduced by Asano et al. as fundamental research for a mesh generation. In an angular Voronoi diagram, the edges are curves of degree three. From view of computational robustness we need to treat the curves…

Computational Geometry · Computer Science 2007-10-05 Hidetoshi Muta , Kimikazu Kato

Recently, the construction of 2D empirical wavelets based on partitioning the Fourier domain with the watershed transform has been proposed. If such approach can build partitions of completely arbitrary shapes, for some applications, it is…

Computational Engineering, Finance, and Science · Computer Science 2024-07-22 Jerome Gilles

This paper presents the Voronoi diagram-based evolutionary algorithm (VorEAl). VorEAl partitions input space in abnormal/normal subsets using Voronoi diagrams. Diagrams are evolved using a multi-objective bio-inspired approach in order to…

Artificial Intelligence · Computer Science 2016-10-28 Marti Luis , Fansi-Tchango Arsene , Navarro Laurent , Marc Schoenauer

An algorithm for the generation of non-uniform, locally-orthogonal staggered unstructured spheroidal grids is described. This technique is designed to generate very high-quality staggered Voronoi/Delaunay meshes appropriate for general…

Atmospheric and Oceanic Physics · Physics 2017-06-08 Darren Engwirda

In unresolved flow CFD-DEM simulations, the porosity values for each CFD cell are determined using a coarse-graining algorithm. While this approach enables coupled simulations of representative numbers of particles, the influence of the…

Fluid Dynamics · Physics 2022-04-18 Hanqiao Che , Catherine O'Sullivan , Adnan Sufian , Edward Smith

We present an explicit and efficient construction of additively weighted Voronoi diagrams on planar graphs. Let $G$ be a planar graph with $n$ vertices and $b$ sites that lie on a constant number of faces. We show how to preprocess $G$ in…

Data Structures and Algorithms · Computer Science 2020-06-26 Paweł Gawrychowski , Haim Kaplan , Shay Mozes , Micha Sharir , Oren Weimann

We present a two-dimensional granular model for the mechanical behavior of an ensemble of globular grains, during solidification. The grain structure is produced by a Voronoi tessellation based on an array of predefined nuclei. We consider…

Materials Science · Physics 2009-08-25 Stéphane Vernède , Jonathan A. Dantzig , Michel Rappaz

We present MOFA, an open-source generative AI (GenAI) plus simulation workflow for high-throughput generation of metal-organic frameworks (MOFs) on large-scale high-performance computing (HPC) systems. MOFA addresses key challenges in…

Many physical systems are composed of polyhedral cells of varying sizes and shapes. These structures are simple in the sense that no more than three faces meet at an edge and no more than four edges meet at a vertex. This means that…

Materials Science · Physics 2022-01-13 Frank H. Lutz , Jeremy K. Mason , Emanuel A. Lazar , Robert D. MacPherson

Voronoi tessellations of Poisson point processes are widely used for modeling many types of physical and biological systems. In this paper, we analyze simulated Poisson-Voronoi structures containing a total of 250,000,000 cells to provide…

Computational Physics · Physics 2014-01-09 Emanuel A. Lazar , Jeremy K. Mason , Robert D. MacPherson , David J. Srolovitz

Voronoi diagrams are highly compact representations that are used in various Graphics applications. In this work, we show how to embed a differentiable version of it -- via a novel deep architecture -- into a generative deep network. By…

Computer Vision and Pattern Recognition · Computer Science 2019-12-10 Francis Williams , Daniele Panozzo , Kwang Moo Yi , Andrea Tagliasacchi

Probing the structure of complex astrophysical objects requires effective three-dimensional (3D) numerical simulation of the relevant radiative transfer (RT) processes. As with any numerical simulation code, the choice of an appropriate…

Instrumentation and Methods for Astrophysics · Physics 2015-06-17 Peter Camps , Maarten Baes , Waad Saftly

We describe conditions under which an appropriately-defined anisotropic Voronoi diagram of a set of sites in Euclidean space is guaranteed to be composed of connected cells in any number of dimensions. These conditions are natural for…

Computational Geometry · Computer Science 2011-02-18 Guillermo D. Canas , Steven J. Gortler

We introduce the Voronoi fundamental zone octonion interpolation framework for grain boundary (GB) structure-property models and surrogates. The VFZO framework offers an advantage over other five degree-of-freedom based property…

Materials Science · Physics 2021-09-14 Sterling G. Baird , Eric R. Homer , David T. Fullwood , Oliver K. Johnson

A highly adaptive load balancing algorithm for parallel simulations using particle methods, such as molecular dynamics and smoothed particle hydrodynamics (SPH), is developed. Our algorithm is based on the dynamic spatial decomposition of…

Computational Physics · Physics 2018-11-14 M. S. Egorova , S. A. Dyachkov , A. N. Parshikov , V. V. Zhakhovsky
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