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Hybrid modeling provides an effective solution to cope with multiple time scales dynamics in systems biology. Among the applications of this method, one of the most important is the cell cycle regulation. The machinery of the cell cycle,…

Computational Engineering, Finance, and Science · Computer Science 2013-09-05 Vincent Noël , Sergey Vakulenko , Ovidiu Radulescu

We present a machine learning algorithm for the prediction of molecule properties inspired by ideas from density functional theory. Using Gaussian-type orbital functions, we create surrogate electronic densities of the molecule from which…

Chemical Physics · Physics 2019-11-27 Michael Eickenberg , Georgios Exarchakis , Matthew Hirn , Stéphane Mallat , Louis Thiry

Rapid developments in the emerging field of stretchable and conformable photonics necessitate analytical expressions for boundary conditions at metasurfaces of arbitrary geometries. Here, we introduce the concept of conformal boundary…

This paper presents a new conformal method for generating simultaneous forecasting bands guaranteed to cover the entire path of a new random trajectory with sufficiently high probability. Prompted by the need for dependable uncertainty…

Machine Learning · Statistics 2024-05-16 Yanfei Zhou , Lars Lindemann , Matteo Sesia

In this work we present an application of the lambda-phi^4 field theoretical model to the adsorption of atoms and molecules on metallic surfaces - the electrochemical deposition. The usual approach to this system consists in the…

Materials Science · Physics 2009-11-10 H. A. Taroco , A. L. Mota

Characterizing the photolysis processes undergone by transient volatile organic compounds in the troposphere requires the knowledge of their photoabsorption cross-section - quantities often challenging to determine experimentally,…

Chemical Physics · Physics 2024-08-01 Daniel Hollas , Basile F. E. Curchod

We study the convergence of Hermitian Dynamic Mode Decomposition (DMD) to the spectral properties of self-adjoint Koopman operators. Hermitian DMD is a data-driven method that approximates the Koopman operator associated with an unknown…

Numerical Analysis · Mathematics 2024-10-08 Nicolas Boullé , Matthew J. Colbrook

Conformal field theories have been long known to describe the fascinating universal physics of scale invariant critical points. They describe continuous phase transitions in fluids, magnets, and numerous other materials, while at the same…

High Energy Physics - Theory · Physics 2019-04-18 David Poland , Slava Rychkov , Alessandro Vichi

We present a new ab initio approach to study molecules containing heavy atoms strongly interacting with quantum fields in optical devices. The theory has been derived from the relativistic quantum electrodynamics (QED) introducing the…

Chemical Physics · Physics 2025-07-03 Guillaume Thiam , Riccardo Rossi , Henrik Koch , Leonardo Belpassi , Enrico Ronca

Theoretical and interpretative study on the subject of photodetachment of H$^{-}$ near a partial reflecting surface is presented, and the absorption effect of the surface is investigated on the total and differential cross sections using a…

Quantum Physics · Physics 2009-11-13 A. Afaq

In nature, excitable reaction-diffusion systems found in diverse settings (e.g. chemical reactions, metal rust, yeast, amoeba, heart, brain) generate geometrically similar macroscopic waves(1,2). For the heart and brain, the spatiotemporal…

Tissues and Organs · Quantitative Biology 2015-08-12 Rebecca A. B. Burton , Alekxandra Klimas , Christina M. Ambrosi , Emilia Entcheva , Gil Bub

Computing dynamical response functions in interacting lattice models is a long standing challenge in condensed matter physics. In view of recent results, the dc resistivity $\rho_\mathrm{dc}$ in the weak coupling regime of the Hubbard model…

Strongly Correlated Electrons · Physics 2025-09-25 Jeremija Kovačević , Michel Ferrero , Jakša Vučičević

We propose a surface hopping Gaussian beam method to numerically solve a class of high frequency linear transport systems in high spatial dimensions, based on asymptotic analysis. The stochastic surface hopping is combined with Gaussian…

Numerical Analysis · Mathematics 2017-03-24 Zhenning Cai , Jianfeng Lu

Transformation optics (TO) is a new tool for controlling electromagnetic fields. In the context of metamaterial technology, it provides a direct link between a desired electromagnetic (EM) phenomenon and the material response required for…

We provide an attention-level control method for the task of coupled image generation, where "coupled" means that multiple simultaneously generated images are expected to have the same or very similar backgrounds. While backgrounds coupled,…

Computer Vision and Pattern Recognition · Computer Science 2025-06-10 Chenfei Yuan , Nanshan Jia , Hangqi Li , Peter W. Glynn , Zeyu Zheng

The multiconfiguration time-dependent Hartree-Fock (MCTDHF) method is formulated for treating the coupled electronic and nuclear dynamics of diatomic molecules without the Born- Oppenheimer approximation. The method treats the full…

Computational Physics · Physics 2015-05-27 Daniel J. Haxton , Keith V. Lawler , C. William McCurdy

We have performed multicanonical chain-growth simulations of a polymer interacting with an adsorbing surface. The polymer, which is not explicitly anchored at the surface, experiences a hierarchy of phase transitions between conformations…

Statistical Mechanics · Physics 2009-11-11 Michael Bachmann , Wolfhard Janke

There is current interest in developing photoactive materials that deform on illumination and can thus be used for photomechanical actuation. This is attractive since it can be affected at a distance, different frequencies can be used to…

Mesoscale and Nanoscale Physics · Physics 2021-01-13 Ruobing Bai , Ying Shi Teh , Kaushik Bhattacharya

Progress in electron-beam spectroscopies has recently enabled the study of optical excitations with combined space, energy and time resolution in the nanometer, millielectronvolt and femtosecond domain, thus providing unique access into…

Optics · Physics 2019-11-13 Albert Polman , Mathieu Kociak , F. Javier García de Abajo

We present the simulation of the photochemical dynamics of cyclobutanone induced by the excitation of the 3s Rydberg state. For this purpose, we apply the complete active space self-consistent field method together with spin-orbit…

Chemical Physics · Physics 2024-01-15 Xincheng Miao , Kira Diemer , Roland Mitrić