Related papers: Merging Sorted Lists of Similar Strings
We consider the clustering aggregation problem in which we are given a set of clusterings and want to find an aggregated clustering which minimizes the sum of mismatches to the input clusterings. In the binary case (each clustering is a…
In-place associative integer sorting technique was developed, improved and specialized for distinct integers. The technique is suitable for integer sorting. Hence, given a list S of n integers S[0...n-1], the technique sorts the integers in…
A sorted set (or map) is one of the most used data types in computer science. In addition to standard set operations, like Insert, Remove, and Contains, it can provide set-set operations such as Union,Intersection, and Difference. Each of…
Simon's congruence $\sim_k$ is defined as follows: two words are $\sim_k$-equivalent if they have the same set of subsequences of length at most $k$. We propose an algorithm which computes, given two words $s$ and $t$, the largest $k$ for…
The string indexing problem is a fundamental computational problem with numerous applications, including information retrieval and bioinformatics. It aims to efficiently solve the pattern matching problem: given a text T of length n for…
We present the first in-place algorithm for sorting an array of size n that performs, in the worst case, at most O(n log n) element comparisons and O(n) element transports. This solves a long-standing open problem, stated explicitly, e.g.,…
Given a set of $k$ strings $I$, their longest common subsequence (LCS) is the string with the maximum length that is a subset of all the strings in $I$. A data-structure for this problem preprocesses $I$ into a data-structure such that the…
In this paper we investigate the problem of partitioning an input string T in such a way that compressing individually its parts via a base-compressor C gets a compressed output that is shorter than applying C over the entire T at once.…
Many Pareto-based multi-objective evolutionary algorithms require to rank the solutions of the population in each iteration according to the dominance principle, what can become a costly operation particularly in the case of dealing with…
The problem of ranking can be described as follows. We have a set of combinatorial objects $S$, such as, say, the k-subsets of n things, and we can imagine that they have been arranged in some list, say lexicographically, and we want to…
Longest common extension queries (often called longest common prefix queries) constitute a fundamental building block in multiple string algorithms, for example computing runs and approximate pattern matching. We show that a sequence of $q$…
We propose an $O(N\cdot M)$ sorting algorithm by Machine Learning method, which shows a huge potential sorting big data. This sorting algorithm can be applied to parallel sorting and is suitable for GPU or TPU acceleration. Furthermore, we…
In this paper we study a variant of string pattern matching which deals with tuples of strings known as \textit{multi-track strings}. Multi-track strings are a generalisation of strings (or \textit{single-track strings}) that have primarily…
We study the problem of cutting a length-$n$ string of positive real numbers into $k$ pieces so that every piece has sum at least $b$. The problem can also be phrased as transforming such a string into a new one by merging adjacent numbers.…
We consider the problem of maintaining a collection of strings while efficiently supporting splits and concatenations on them, as well as comparing two substrings, and computing the longest common prefix between two suffixes. This problem…
String matching is the problem of finding all the occurrences of a pattern in a text. We propose improved versions of the fast family of string matching algorithms based on hashing $q$-grams. The improvement consists of considering minimal…
In this paper we present novel algorithmic techniques with a O(H(N)+N/H(N)) time complexity for performing several types of queries and updates on general rooted trees, binary search trees and lists of size N. For rooted trees we introduce…
We consider the problem of sorting $n$ elements subject to persistent random comparison errors. In this problem, each comparison between two elements can be wrong with some fixed (small) probability $p$, and comparing the same pair of…
Let $\mathcal S \subseteq \mathbb Z^m \oplus T$ be a finitely generated and reduced monoid. In this paper we develop a general strategy to study the set of elements in $\mathcal S$ having at least two factorizations of the same length,…
The problem of constructing optimal factoring automata arises in the context of unification factoring for the efficient execution of logic programs. Given an ordered set of $n$ strings of length $m$, the problem is to construct a trie-like…