Related papers: Merging Sorted Lists of Similar Strings
The problem of hierarchical clustering items from pairwise similarities is found across various scientific disciplines, from biology to networking. Often, applications of clustering techniques are limited by the cost of obtaining…
Given a multiset $X=\{x_1,..., x_n\}$ of real numbers, the {\it floating-point set summation} problem asks for $S_n=x_1+...+x_n$. Let $E^*_n$ denote the minimum worst-case error over all possible orderings of evaluating $S_n$. We prove that…
We study permutation (jumbled/Abelian) pattern matching over a general alphabet $\Sigma$. Given a pattern P of length m and a text T of length n, the classical task is to decide whether T contains a length-m substring whose Parikh vector…
String matching is a fundamental problem in computer science, with critical applications in text retrieval, bioinformatics, and data analysis. Among the numerous solutions that have emerged for this problem in recent decades,…
Consider an input text string T[1,N] drawn from an unbounded alphabet. We study partial computation in suffix-based problems for Data Compression and Text Indexing such as (I) retrieve any segment of K<=N consecutive symbols from the…
The random access problem for compressed strings is to build a data structure that efficiently supports accessing the character in position $i$ of a string given in compressed form. Given a grammar of size $n$ compressing a string of size…
An elastic-degenerate (ED) string is a sequence of $n$ sets of strings of total length $N$, which was recently proposed to model a set of similar sequences. The ED string matching (EDSM) problem is to find all occurrences of a pattern of…
We propose efficient algorithms for enumerating maximal common subsequences (MCSs) of two strings. Efficiency of the algorithms are estimated by the preprocessing-time, space, and delay-time complexities. One algorithm prepares a…
This paper studies the \emph{subset sampling} problem. The input is a set $\mathcal{S}$ of $n$ records together with a function $\textbf{p}$ that assigns each record $v\in\mathcal{S}$ a probability $\textbf{p}(v)$. A query returns a random…
Motivated by the imminent growth of massive, highly redundant genomic databases, we study the problem of compressing a string database while simultaneously supporting fast random access, substring extraction and pattern matching to the…
In this work, we study the generalized sorting problem, where we are given a set of $n$ elements to be sorted, but only a subset of all possible pairwise element comparisons is allowed. We look at the problem from the perspective of the…
We revisit the complexity of approximate pattern matching in an elastic-degenerate string. Such a string is a sequence of $n$ finite sets of strings of total length $N$, and compactly describes a collection of strings obtained by first…
Given a list of N numbers, the maximum can be computed in N iterations. During these N iterations, the maximum gets updated on average as many times as the Nth harmonic number. We first use this fact to approximate the Nth harmonic number…
We present an online algorithm to deal with pattern matching in strings. The problem we investigate is commonly known as string matching with mismatches in which the objective is to report the number of characters that match when a pattern…
The element distinctness problem takes as input a list $I$ of $n$ values from a totally ordered universe and the goal is to decide whether $I$ contains any duplicates. It is a well-studied problem with a classical worst-case $\Omega(n \log…
We study codes that are list-decodable under insertions and deletions. Specifically, we consider the setting where a codeword over some finite alphabet of size $q$ may suffer from $\delta$ fraction of adversarial deletions and $\gamma$…
The fundamental question considered in algorithms on strings is that of indexing, that is, preprocessing a given string for specific queries. By now we have a number of efficient solutions for this problem when the queries ask for an exact…
Sorting and searching are large parts of database query processing, e.g., in the forms of index creation, index maintenance, and index lookup; and comparing pairs of keys is a substantial part of the effort in sorting and searching. We have…
Sorting and hashing are two completely different concepts in computer science, and appear mutually exclusive to one another. Hashing is a search method using the data as a key to map to the location within memory, and is used for rapid…
Various decision support systems are available that implement Data Mining and Data Warehousing techniques for diving into the sea of data for getting useful patterns of knowledge (pearls). Classification, regression, clustering, and many…