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We present the extension of the Tinker-HP package (Lagard\`ere et al., Chem. Sci., 2018,9, 956-972) to the use of Graphics Processing Unit (GPU) cards to accelerate molecular dynamics simulations using polarizable many-body force fields.…

We report the implementation of a multi-CPU and multi-GPU massively parallel platform dedicated to the explicit inclusion of nuclear quantum effects (NQEs) in the Tinker-HP molecular dynamics (MD) package. The platform, denoted Quantum-HP,…

Recently, Deep Neural Networks (DNNs) have recorded great success in handling medical and other complex classification tasks. However, as the sizes of a DNN model and the available dataset increase, the training process becomes more complex…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-02-08 Samson B. Akintoye , Liangxiu Han , Xin Zhang , Haoming Chen , Daoqiang Zhang

Deep neural networks (DNNs) offer plenty of challenges in executing efficient computation at edge nodes, primarily due to the huge hardware resource demands. The article proposes HYDRA, hybrid data multiplexing, and runtime layer…

Hardware Architecture · Computer Science 2026-03-31 Sonu Kumar , Komal Gupta , Gopal Raut , Mukul Lokhande , Santosh Kumar Vishvakarma

Spike-based neuromorphic hardware holds the promise to provide more energy efficient implementations of Deep Neural Networks (DNNs) than standard hardware such as GPUs. But this requires to understand how DNNs can be emulated in an…

Neural and Evolutionary Computing · Computer Science 2021-11-09 Philipp Plank , Arjun Rao , Andreas Wild , Wolfgang Maass

Neural network interatomic potentials (NNPs) have recently proven to be powerful tools to accurately model complex molecular systems while bypassing the high numerical cost of ab-initio molecular dynamics simulations. In recent years,…

Chemical Physics · Physics 2024-07-29 Thomas Plé , Olivier Adjoua , Louis Lagardère , Jean-Philip Piquemal

Artificial neural network potentials (NNPs) have emerged as effective tools for understanding atomic interactions at the atomic scale in various phenomena. Recently, we developed highly transferable NNPs for {\alpha}-iron and…

Materials Science · Physics 2023-12-01 Shihao Zhang , Fanshun Meng , Rong Fu , Shigenobu Ogata

Artificial neural network (ANN) potentials enable highly accurate atomistic simulations of complex materials at unprecedented scales. Despite their promise, training ANN potentials to represent intricate potential energy surfaces (PES) with…

Disordered Systems and Neural Networks · Physics 2025-11-11 In Won Yeu , Annika Stuke , Jon L. pez-Zorrilla , James M. Stevenson , David R. Reichman , Richard A. Friesner , Alexander Urban , Nongnuch Artrith

Machine learning potentials have emerged as a means to enhance the accuracy of biomolecular simulations. However, their application is constrained by the significant computational cost arising from the vast number of parameters compared to…

Molecular dynamics (MD) simulation, which is considered an important tool for studying physical and chemical processes at the atomic scale, requires accurate calculations of energies and forces. Although reliable energies and forces can be…

Materials Science · Physics 2021-12-06 Van-Quyen Nguyen , Viet-Cuong Nguyen , Tien-Cuong Nguyen , Tien-Lam Pham

The interaction of condensed phase systems with external electric fields is crucial in myriad processes in nature and technology ranging from the field-directed motion of cells (galvanotaxis), to energy storage and conversion systems…

Chemical Physics · Physics 2024-09-25 Kit Joll , Philipp Schienbein , Kevin M. Rosso , Jochen Blumberger

Deep learning is revolutionizing many areas of science and technology, especially image, text and speech recognition. In this paper, we demonstrate how a deep neural network (NN) trained on quantum mechanical (QM) DFT calculations can learn…

Chemical Physics · Physics 2017-02-10 Justin S. Smith , Olexandr Isayev , Adrian E. Roitberg

The design of accurate helium-solute interaction potentials for the simulation of chemically complex molecules solvated in superfluid helium has long been a cumbersome task due to the rather weak but strongly anisotropic nature of the…

Chemical Physics · Physics 2021-03-25 Christoph Schran , Felix Uhl , Jörg Behler , Dominik Marx

Universal machine-learning interatomic potentials (uMLIPs) enable reactive molecular simulations with near-DFT accuracy, yet applying them efficiently to large, realistic condensed-phase systems remains computationally demanding. Here we…

Materials Science · Physics 2026-03-25 Yu Miyazaki , Atsuhiro Tomita , Akihide Hayashi , So Takamoto , Mizuki Takemoto , Hodaka Mori

We introduce a new parametrization of the AMOEBA polarizable force field for water denoted Q-AMOEBA, for use in simulations that explicitly account for nuclear quantum effects (NQEs). This study is made possible thanks to the recently…

Chemical Physics · Physics 2022-11-15 Nastasia Mauger , Thomas Plé , Louis Lagardère , Simon Huppert , Jean-Philip Piquemal

Deep neural networks (DNNs) have found applications in diverse signal processing (SP) problems. Most efforts either directly adopt the DNN as a black-box approach to perform certain SP tasks without taking into account of any known…

Signal Processing · Electrical Eng. & Systems 2022-04-27 Zhe Zhang , Xiang Chen , Zhi Tian

Neural network potentials (NNPs) enable large-scale molecular dynamics (MD) simulations of systems containing >10,000 atoms with the accuracy comparable to ab initio methods and play a crucial role in material studies. Although NNPs are…

Spiking Neural Networks (SNNs) may offer an energy-efficient alternative for implementing deep learning applications. In recent years, there have been several proposals focused on supervised (conversion, spike-based gradient descent) and…

Computer Vision and Pattern Recognition · Computer Science 2019-10-31 Priyadarshini Panda , Aparna Aketi , Kaushik Roy

Numerical simulation of time-dependent partial differential equations (PDEs) is central to scientific and engineering applications, but high-fidelity solvers are often prohibitively expensive for long-horizon or time-critical settings.…

Machine Learning · Computer Science 2025-12-23 Rajyasri Roy , Dibyajyoti Nayak , Somdatta Goswami

Autonomous electrolyte discovery demands a computational engine that satisfies a critical trilemma: it must be fast enough for high-throughput screening, accurate enough for quantitative property prediction, and calibratable enough for…

Materials Science · Physics 2026-04-10 Xintian Wang , Junmin Chen , Zhuoying Zhu , Peichen Zhong
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