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Algorithms that detect covariance between pairs of columns in multiple sequence alignments are commonly employed to predict functionally important residues and structural contacts. However, the assumption that co-variance only occurs…

Quantitative Methods · Quantitative Biology 2014-01-07 Kyle E. Kreth , Anthony A. Fodor

We evaluate the covariance matrix of the matter power spectrum using perturbation theory up to dominant terms at 1-loop order and compare it to numerical simulations. We decompose the covariance matrix into the disconnected (Gaussian) part,…

Cosmology and Nongalactic Astrophysics · Physics 2017-01-18 Irshad Mohammed , Uros Seljak , Zvonimir Vlah

Covariance matrix estimation concerns the problem of estimating the covariance matrix from a collection of samples, which is of extreme importance in many applications. Classical results have shown that $O(n)$ samples are sufficient to…

Information Theory · Computer Science 2019-03-19 Wei Cui , Xu Zhang , Yulong Liu

Analyzing large samples of high-dimensional data under dependence is a challenging statistical problem as long time series may have change points, most importantly in the mean and the marginal covariances, for which one needs valid tests.…

Methodology · Statistics 2022-11-07 Fabian Mies , Ansgar Steland

Core-sets refer to subsets of data that maximize some function that is commonly a diversity or group requirement. These subsets are used in place of the original data to accomplish a given task with comparable or even enhanced performance…

Machine Learning · Computer Science 2023-08-14 Stephanie Wang , Michael Flynn , Fangyu Luo

We explore the effect of finite population sampling in design problems with many variables cross-classified in many ways. In particular, we investigate designs where we wish to sample individuals belonging to different groups for which the…

Methodology · Statistics 2017-11-30 Simon C. Shaw , Michael Goldstein

A crucial assumption to reduce computational complexity in spatial-temporal data analysis is separability, which factors the covariance structure into a purely spatial and a purely temporal component. In this paper, we develop statistical…

Statistics Theory · Mathematics 2026-03-30 Lujia Bai , Holger Dette , Zihao Yuan

Estimating a covariance matrix and its associated principal components is a fundamental problem in contemporary statistics. While optimal estimation procedures have been developed with well-understood properties, the increasing demand for…

Statistics Theory · Mathematics 2024-09-30 T. Tony Cai , Dong Xia , Mengyue Zha

Data for several applications in diverse fields can be represented as multiple matrices that are linked across rows or columns. This is particularly common in molecular biomedical research, in which multiple molecular "omics" technologies…

Machine Learning · Statistics 2024-08-02 Eric F. Lock

Cosmological covariance matrices are fundamental for parameter inference, since they are responsible for propagating uncertainties from the data down to the model parameters. However, when data vectors are large, in order to estimate…

Cosmology and Nongalactic Astrophysics · Physics 2022-09-13 Natalí S. M. de Santi , L. Raul Abramo

The problem of decomposing a given covariance matrix as the sum of a positive semi-definite matrix of given rank and a positive semi-definite diagonal matrix, is considered. We present a projection-type algorithm to address this problem.…

Optimization and Control · Mathematics 2018-06-13 Valentina Ciccone , Augusto Ferrante , Mattia Zorzi

Covariance Neural Networks (VNNs) perform graph convolutions on the covariance matrix of input data to leverage correlation information as pairwise connections. They have achieved success in a multitude of applications such as neuroscience,…

Machine Learning · Computer Science 2025-09-30 Andrea Cavallo , Zhan Gao , Elvin Isufi

The inverse covariance matrix provides considerable insight for understanding statistical models in the multivariate setting. In particular, when the distribution over variables is assumed to be multivariate normal, the sparsity pattern in…

Machine Learning · Statistics 2017-10-20 Addison Hu , Sahand Negahban

Accurate and precise covariance matrices will be important in enabling planned cosmological surveys to detect new physics. Standard methods imply either the need for many N-body simulations in order to obtain an accurate estimate, or a…

Cosmology and Nongalactic Astrophysics · Physics 2018-12-13 Alex Hall , Andy Taylor

A constrained L1 minimization method is proposed for estimating a sparse inverse covariance matrix based on a sample of $n$ iid $p$-variate random variables. The resulting estimator is shown to enjoy a number of desirable properties. In…

Methodology · Statistics 2011-02-14 Tony Cai , Weidong Liu , Xi Luo

This paper studies the problem of estimating a covariance matrix from correlated sub-Gaussian samples. We consider using the correlated sample covariance matrix estimator to approximate the true covariance matrix. We establish…

Information Theory · Computer Science 2019-10-17 Xu Zhang , Wei Cui , Yulong Liu

This paper introduces a matrix-variate regression model for analyzing multivariate data observed across spatial locations and over time. The model's design incorporates a mean structure that links covariates to the response matrix and a…

We develop a multi-level restricted Gaussian maximum likelihood method for estimating the covariance function parameters and computing the best unbiased predictor. Our approach produces a new set of multi-level contrasts where the…

Computation · Statistics 2016-03-29 Julio E. Castrillon-Candas , Marc G. Genton , Rio Yokota

Recent literature provides many computational and modeling approaches for covariance matrices estimation in a penalized Gaussian graphical models but relatively little study has been carried out on the choice of the tuning parameter. This…

Methodology · Statistics 2009-09-08 Heng Lian

Many popular statistical models, such as factor and random effects models, give arise a certain type of covariance structures that is a summation of low rank and sparse matrices. This paper introduces a penalized approximation framework to…

Methodology · Statistics 2015-03-19 Xi Luo