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We consider the reconciliation problem, in which the task is to find a mapping of a gene tree into a species tree, so as to maximize the likelihood of such fitting, given the available data. We describe a model for the evolution of the…

Populations and Evolution · Quantitative Biology 2023-11-09 Albert C. Soewongsono , Jiahao Diao , Tristan Stark , Amanda E. Wilson , David A. Liberles , Barbara R. Holland , Malgorzata M. O'Reilly

k-means is a widely used clustering algorithm, but for $k$ clusters and a dataset size of $N$, each iteration of Lloyd's algorithm costs $O(kN)$ time. Although there are existing techniques to accelerate single Lloyd iterations, none of…

Data Structures and Algorithms · Computer Science 2016-01-18 Ryan R. Curtin

In this paper we offer a new perspective on the well established agglomerative clustering algorithm, focusing on recovery of hierarchical structure. We recommend a simple variant of the standard algorithm, in which clusters are merged by…

Machine Learning · Statistics 2024-03-04 Annie Gray , Alexander Modell , Patrick Rubin-Delanchy , Nick Whiteley

Regularization is a core component of modern inverse problems, as it helps establish the well-posedness of the solution of interest. Popular regularization approaches include variational regularization and iterative regularization. The…

Optimization and Control · Mathematics 2025-08-08 Jie Gao , Cesare Molinari , Silvia Villa , Jingwei Liang

Ensembles of machine learning models have been well established as a powerful method of improving performance over a single model. Traditionally, ensembling algorithms train their base learners independently or sequentially with the goal of…

Machine Learning · Computer Science 2023-11-01 Alan Jeffares , Tennison Liu , Jonathan Crabbé , Mihaela van der Schaar

Ensembling word embeddings to improve distributed word representations has shown good success for natural language processing tasks in recent years. These approaches either carry out straightforward mathematical operations over a set of…

Computation and Language · Computer Science 2018-08-14 James O' Neill , Danushka Bollegala

We construct a model of strategic imitation in an arbitrary network of players who interact through an additive game. Assuming a discrete time update, we show a condition under which the resulting difference equations converge to consensus.…

Dynamical Systems · Mathematics 2019-04-15 Christopher Griffin , Sarah Rajtmajer , Anna Squicciarini , Andrew Belmonte

There has been recent interest in improving performance of simple models for multiple reasons such as interpretability, robust learning from small data, deployment in memory constrained settings as well as environmental considerations. In…

Machine Learning · Computer Science 2020-06-23 Amit Dhurandhar , Karthikeyan Shanmugam , Ronny Luss

Joint distributions over many variables are frequently modeled by decomposing them into products of simpler, lower-dimensional conditional distributions, such as in sparsely connected Bayesian networks. However, automatically learning such…

Machine Learning · Computer Science 2013-01-07 Scott Davies , Andrew Moore

Deep predictive models of neuronal activity have recently enabled several new discoveries about the selectivity and invariance of neurons in the visual cortex. These models learn a shared set of nonlinear basis functions, which are linearly…

Neurons and Cognition · Quantitative Biology 2024-06-19 Polina Turishcheva , Max Burg , Fabian H. Sinz , Alexander Ecker

Decision trees are renowned for their ability to achieve high predictive performance while remaining interpretable, especially on tabular data. Traditionally, they are constructed through recursive algorithms, where they partition the data…

Machine Learning · Computer Science 2024-08-27 Yufan Zhuang , Liyuan Liu , Chandan Singh , Jingbo Shang , Jianfeng Gao

One of the important features of an interconnection network is its ability to efficiently simulate programs or parallel algorithms written for other architectures. Such a simulation problem can be mathematically formulated as a graph…

Combinatorics · Mathematics 2019-11-19 A. Arul Shantrinal , R. Sundara Rajan , A. Ramesh Babu , S. Anil , Mohammed Ali Ahmed

Word embeddings -- distributed representations of words -- in deep learning are beneficial for many tasks in natural language processing (NLP). However, different embedding sets vary greatly in quality and characteristics of the captured…

Computation and Language · Computer Science 2015-12-31 Wenpeng Yin , Hinrich Schütze

We study an abstract notion of tree structure which lies at the common core of various tree-like discrete structures commonly used in combinatorics: trees in graphs, order trees, nested subsets of a set, tree-decompositions of graphs and…

Combinatorics · Mathematics 2017-02-28 Reinhard Diestel

We study various types of consistency of honest decision trees and random forests in the regression setting. In contrast to related literature, our proofs are elementary and follow the classical arguments used for smoothing methods. Under…

Methodology · Statistics 2026-05-21 Martin Bladt , Rasmus Frigaard Lemvig

In recent years, information-theoretic generalization bounds have gained increasing attention for analyzing the generalization capabilities of meta-learning algorithms. However, existing results are confined to two-step bounds, failing to…

Machine Learning · Statistics 2025-10-14 Wen Wen , Tieliang Gong , Yuxin Dong , Zeyu Gao , Yong-Jin Liu

The Bradley-Terry model is a popular approach to describe probabilities of the possible outcomes when elements of a set are repeatedly compared with one another in pairs. It has found many applications including animal behaviour, chess…

Methodology · Statistics 2015-03-17 Francois Caron , Arnaud Doucet

The paper presents an iterative version of join-tree clustering that applies the message passing of join-tree clustering algorithm to join-graphs rather than to join-trees, iteratively. It is inspired by the success of Pearl's belief…

Artificial Intelligence · Computer Science 2013-01-07 Rina Dechter , Kalev Kask , Robert Mateescu

A common meadow is an enrichment of a field with a partial division operation that is made total by assuming that division by zero takes the a default value, a special element $\bot$ adjoined to the field. To a common meadow of real numbers…

Information Theory · Computer Science 2025-02-12 Jan A Bergstra , John V Tucker

Counterfactual explanations are usually generated through heuristics that are sensitive to the search's initial conditions. The absence of guarantees of performance and robustness hinders trustworthiness. In this paper, we take a…

Machine Learning · Computer Science 2021-06-28 Axel Parmentier , Thibaut Vidal