Related papers: Subsequences in Bounded Ranges: Matching and Analy…
We generalise a multiple string pattern matching algorithm, recently proposed by Fredriksson and Grabowski [J. Discr. Alg. 7, 2009], to deal with arbitrary dictionaries on an alphabet of size $s$. If $r_m$ is the number of words of length…
A double occurrence word $w$ over a finite alphabet $\Sigma$ is a word in which each alphabet letter appears exactly twice. Such words arise naturally in the study of topology, graph theory, and combinatorics. Recently, double occurrence…
We consider commutative regular and context-free grammars, or, in other words, Parikh images of regular and context-free languages. By using linear algebra and a branching analog of the classic Euler theorem, we show that, under an…
Overlapping clusters are common in models of many practical data-segmentation applications. Suppose we are given $n$ elements to be clustered into $k$ possibly overlapping clusters, and an oracle that can interactively answer queries of the…
We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…
We study the problem of bounding the posterior distribution of discrete probabilistic programs with unbounded support, loops, and conditioning. Loops pose the main difficulty in this setting: even if exact Bayesian inference is possible,…
In combinatorics on words, a word $w$ over an alphabet $\Sigma$ is said to avoid a pattern $p$ over an alphabet $\Delta$ of variables if there is no factor $f$ of $w$ such that $f=h(p)$ where $h:\Delta^*\to\Sigma^*$ is a non-erasing…
It is well known that sparse approximation problem is \textsf{NP}-hard under general dictionaries. Several algorithms have been devised and analyzed in the past decade under various assumptions on the \emph{coherence} $\mu$ of the…
We consider the number of occurrences of subwords (non-consecutive sub-sequences) in a given word. We first define the notion of subword entropy of a given word that measures the maximal number of occurrences among all possible subwords. We…
Consider a finite set of sources, each producing i.i.d. observations that follow a unique probability distribution on a finite alphabet. We study the problem of matching a finite set of observed sequences to the set of sources under the…
Consider an independent site percolation model on $\Z^d$, with parameter $p \in (0,1)$, where all long range connections in the axes directions are allowed. In this work we show that given any parameter $p$, there exists and integer $K(p)$…
Sequence comparison is a prerequisite to virtually all comparative genomic analyses. It is often realized by sequence alignment techniques, which are computationally expensive. This has led to increased research into alignment-free…
We study 4 problems in string matching, namely, regular expression matching, approximate regular expression matching, string edit distance, and subsequence indexing, on a standard word RAM model of computation that allows logarithmic-sized…
The current scenario in the field of computing is largely affected by the speed at which data can be accessed and recalled. In this paper, we present the word existence algorithm which is used to check if the word given as an input is part…
Given a text $T$ of length $n$ and a pattern $P$ of length $m$, the string matching problem is a task to find all occurrences of $P$ in $T$. In this study, we propose an algorithm that solves this problem in $O((n + m)q)$ time considering…
Two words are $k$-binomially equivalent if each subword of length at most $k$ occurs the same number of times in both words. The $k$-binomial complexity of an infinite word is a counting function that maps $n$ to the number of $k$-binomial…
Given a subset of states $S$ of a deterministic finite automaton and a word $w$, the preimage is the subset of all states mapped to a state in $S$ by the action of $w$. We study three natural problems concerning words giving certain…
Satisfiability of word equations is an important problem in the intersection of formal languages and algebra: Given two sequences consisting of letters and variables we are to decide whether there is a substitution for the variables that…
Semantic matching of natural language sentences or identifying the relationship between two sentences is a core research problem underlying many natural language tasks. Depending on whether training data is available, prior research has…
Given several number sequences, determining the longest common subsequence is a classical problem in computer science. This problem has applications in bioinformatics, especially determining transposable genes. Nevertheless, related works…