Related papers: Subsequences in Bounded Ranges: Matching and Analy…
Separation is a classical problem asking whether, given two sets belonging to some class, it is possible to separate them by a set from a smaller class. We discuss the separation problem for regular languages. We give a Ptime algorithm to…
In this paper we revisit the classical regular expression matching problem, namely, given a regular expression $R$ and a string $Q$, decide if $Q$ matches one of the strings specified by $R$. Let $m$ and $n$ be the length of $R$ and $Q$,…
Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…
We study the complexity of the problem of searching for a set of patterns that separate two given sets of strings. This problem has applications in a wide variety of areas, most notably in data mining, computational biology, and in…
Recognizing lexical semantic relations between word pairs is an important task for many applications of natural language processing. One of the mainstream approaches to this task is to exploit the lexico-syntactic paths connecting two…
We consider the problem of learning co-occurrence information between two word categories, or more in general between two discrete random variables taking values in a hierarchically classified domain. In particular, we consider the problem…
A reconstruction problem of words from scattered factors asks for the minimal information, like multisets of scattered factors of a given length or the number of occurrences of scattered factors from a given set, necessary to uniquely…
There is a deep connection between permutations and trees. Certain sub-structures of permutations, called sub-permutations, bijectively map to sub-trees of binary increasing trees. This opens a powerful tool set to study enumerative and…
In this paper we consider two problems concerning string factorisation. Specifically given a string $w$ and an integer $k$ find a factorisation of $w$ where each factor has length bounded by $k$ and has the minimum (the FmD problem) or the…
Piecewise testable languages are a subclass of the regular languages. There are many equivalent ways of defining them; Simon's congruence $\sim_k$ is one of the most classical approaches. Two words are $\sim_k$-equivalent if they have the…
We present a new algorithm for subsequence matching in grammar compressed strings. Given a grammar of size $n$ compressing a string of size $N$ and a pattern string of size $m$ over an alphabet of size $\sigma$, our algorithm uses…
Motivated by computing duplication patterns in sequences, a new fundamental problem called the longest subsequence-repeated subsequence (LSRS) is proposed. Given a sequence $S$ of length $n$, a letter-repeated subsequence is a subsequence…
Let $w$ be a string of length $n$. The problem of counting factors crossing a position - Problem 64 from the textbook ``125 Problems in Text Algorithms'' [Crochemore, Leqroc, and Rytter, 2021], asks to count the number $\mathcal{C}(w,k)$…
We study the relation between the palindromic and factor complexity of infinite words. We show that for uniformly recurrent words one has P(n)+P(n+1) \leq \Delta C(n) + 2, for all n \in N. For a large class of words it is a better estimate…
This paper addresses the online exact string matching problem which consists in finding all occurrences of a given pattern p in a text t. It is an extensively studied problem in computer science, mainly due to its direct applications to…
Permutation Pattern Matching (or PPM) is a decision problem whose input is a pair of permutations $\pi$ and $\tau$, represented as sequences of integers, and the task is to determine whether $\tau$ contains a subsequence order-isomorphic to…
The classic string indexing problem is to preprocess a string $S$ into a compact data structure that supports efficient subsequent pattern matching queries, that is, given a pattern string $P$, report all occurrences of $P$ within $S$. In…
Gibbons and Korach studied a fundamental problem in 1997: given an observed sequence of reads and writes of a multi-threaded program, does there exist an interleaving which is sequentially consistent? Apart from applications in testing…
Sequence comparison is a prerequisite to virtually all comparative genomic analyses. It is often realised by sequence alignment techniques, which are computationally expensive. This has led to increased research into alignment-free…
Separation is a classical problem in mathematics and computer science. It asks whether, given two sets belonging to some class, it is possible to separate them by another set of a smaller class. We present and discuss the separation problem…