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For scientific knowledge to be findable, accessible, interoperable, and reusable, it needs to be machine-readable. Moving forward from post-publication extraction of knowledge, we adopted a pre-publication approach to write research…

Digital Libraries · Computer Science 2025-12-12 Olga Lezhnina , Manuel Prinz , Markus Stocker

The way in which data are shared can affect their utility and reusability. Here, we demonstrate how data that we had previously shared in bulk can be mobilized further through a knowledge graph that allows for much more granular exploration…

Computational Engineering, Finance, and Science · Computer Science 2025-01-07 Sheeba Samuel , Daniel Mietchen

The field of deep learning has witnessed significant breakthroughs, spanning various applications, and fundamentally transforming current software capabilities. However, alongside these advancements, there have been increasing concerns…

Machine Learning · Computer Science 2025-05-07 Nikita Ravi , Abhinav Goel , James C. Davis , George K. Thiruvathukal

Recent research has shown that transformer networks can be used as differentiable search indexes by representing each document as a sequences of document ID tokens. These generative retrieval models cast the retrieval problem to a document…

Information Retrieval · Computer Science 2023-11-16 Hansi Zeng , Chen Luo , Bowen Jin , Sheikh Muhammad Sarwar , Tianxin Wei , Hamed Zamani

Research community evaluations in information retrieval, such as NIST's Text REtrieval Conference (TREC), build reusable test collections by pooling document rankings submitted by many teams. Naturally, the quality of the resulting test…

Information Retrieval · Computer Science 2022-06-07 Md Mustafizur Rahman , Mucahid Kutlu , Matthew Lease

Computer simulations are an essential pillar of knowledge generation in science. Exploring, understanding, reproducing, and sharing the results of simulations relies on tracking and organizing the metadata describing the numerical…

Information Retrieval · Computer Science 2025-06-13 José Villamar , Matthias Kelbling , Heather L. More , Michael Denker , Tom Tetzlaff , Johanna Senk , Stephan Thober

Norm-aware recommender systems have gained increased attention, especially for diversity optimization. The recommender systems community has well-established experimentation pipelines that support reproducible evaluations by facilitating…

Information Retrieval · Computer Science 2025-08-19 Lucien Heitz , Runze Li , Oana Inel , Abraham Bernstein

Scientists increasingly recognize the importance of providing rich, standards-adherent metadata to describe their experimental results. Despite the availability of sophisticated tools to assist in the process of data annotation,…

Metadata, often termed "data about data," is crucial for organizing, understanding, and managing vast omics datasets. It aids in efficient data discovery, integration, and interpretation, enabling users to access, comprehend, and utilize…

The trend toward open science increases the pressure on authors to provide access to the source code and data they used to compute the results reported in their scientific papers. Since sharing materials reproducibly is challenging, several…

Digital Libraries · Computer Science 2020-07-15 Markus Konkol , Daniel Nüst , Laura Goulier

Small to medium-scale data science experiments often rely on research software developed ad-hoc by individual scientists or small teams. Often there is no time to make the research software fast, reusable, and open access. The consequence…

Software Engineering · Computer Science 2022-11-10 Moritz Schubotz , Ankit Satpute , Andre Greiner-Petter , Akiko Aizawa , Bela Gipp

Concerns about the reproducibility of deep learning research are more prominent than ever, with no clear solution in sight. The relevance of machine learning research can only be improved if we also employ empirical rigor that incorporates…

Machine Learning · Computer Science 2022-10-21 Attila Simko , Anders Garpebring , Joakim Jonsson , Tufve Nyholm , Tommy Löfstedt

Analytical code is essential for reproducing diagnostic and prognostic prediction model research, yet code availability in the published literature remains limited. While the TRIPOD statements set standards for reporting prediction model…

Reproducibility is a key requirement for scientific progress. It allows the reproduction of the works of others, and, as a consequence, to fully trust the reported claims and results. In this work, we argue that, by facilitating…

Information Retrieval · Computer Science 2021-02-02 Alejandro Bellogín , Alan Said

Over the past few years, deep learning methods have been applied for a wide range of Software Engineering (SE) tasks, including in particular for the important task of automatically predicting and localizing faults in software. With the…

Software Engineering · Computer Science 2024-02-09 Adil Mukhtar , Dietmar Jannach , Franz Wotawa

Research software is an integral part of most research today and it is widely accepted that research software artifacts should be accessible and reproducible. However, the sustainable archival of research software artifacts is an ongoing…

Scientists rely on simulations to study natural phenomena. Trusting the simulation results is vital to develop sciences in any field. One approach to build trust is to ensure the reproducibility and traceability of the simulations through…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-09-21 Paula Olaya , Jay Lofstead , Michela Taufer

Even though computational reproducibility is widely accepted as necessary for research validation and reuse, it is often not considered during the research process. This is because reproducibility tools are typically stand-alone and require…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-03-04 Ana Trisovic , Chris R. Jones , Ben Couturier , Marco Clemencic

Pre-trained models (PM) have achieved promising results in content generation. However, the space for human creativity and imagination is endless, and it is still unclear whether the existing models can meet the needs. Model-generated…

Computation and Language · Computer Science 2023-02-28 Hongyin Zhu

Unstructured text data annotation is foundational to management research. LLMs offer a cost-effective and scalable alternative to human annotation, but they introduce a novel challenge: the annotator itself can be retired. Proprietary…

Computation and Language · Computer Science 2026-05-13 Xiang Cheng , Raveesh Mayya , João Sedoc
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