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Generating molecular graphs is a challenging task due to their discrete nature and the competitive objectives involved. Diffusion models have emerged as SOTA approaches in data generation across various modalities. For molecular graphs,…

Machine Learning · Computer Science 2025-01-08 Prashanth Pombala , Gerrit Grossmann , Verena Wolf

Image manipulation on the latent space of the pre-trained StyleGAN can control the semantic attributes of the generated images. Recently, some studies have focused on detecting channels with specific properties to directly manipulate the…

Computer Vision and Pattern Recognition · Computer Science 2023-02-21 Yuanjie Yan , Jian Zhao , Furao Shen

There has been a growing interest in statistical inference from data satisfying the so-called manifold hypothesis, assuming data points in the high-dimensional ambient space to lie in close vicinity of a submanifold of much lower dimension.…

Methodology · Statistics 2023-01-04 Rong Tang , Yun Yang

Understanding how the brain encodes stimuli has been a fundamental problem in computational neuroscience. Insights into this problem have led to the design and development of artificial neural networks that learn representations by…

Neurons and Cognition · Quantitative Biology 2025-12-04 Shubham Choudhary , Paul Masset , Demba Ba

Recent empirical evidence shows that LLM representations encode human-interpretable concepts. Nevertheless, the mechanisms by which these representations emerge remain largely unexplored. To shed further light on this, we introduce a novel…

Machine Learning · Computer Science 2026-03-03 Yuhang Liu , Dong Gong , Yichao Cai , Erdun Gao , Zhen Zhang , Biwei Huang , Mingming Gong , Anton van den Hengel , Javen Qinfeng Shi

Learning interpretable representations of data generative latent factors is an important topic for the development of artificial intelligence. With the rise of the large multimodal model, it can align images with text to generate answers.…

Machine Learning · Computer Science 2024-04-19 Mengdan Zhu , Zhenke Liu , Bo Pan , Abhinav Angirekula , Liang Zhao

Deep generative models are attracting great attention as a new promising approach for molecular design. All models reported so far are based on either variational autoencoder (VAE) or generative adversarial network (GAN). Here we propose a…

Chemical Physics · Physics 2019-12-13 Seung Hwan Hong , Jaechang Lim , Seongok Ryu , Woo Youn Kim

Identifying subtle phenotypic variations in cellular images is critical for advancing biological research and accelerating drug discovery. These variations are often masked by the inherent cellular heterogeneity, making it challenging to…

Computer Vision and Pattern Recognition · Computer Science 2026-01-28 Anis Bourou , Biel Castaño Segade , Thomas Boyer , Valérie Mezger , Auguste Genovesio

The contractive auto-encoder learns a representation of the input data that captures the local manifold structure around each data point, through the leading singular vectors of the Jacobian of the transformation from input to…

Machine Learning · Computer Science 2012-07-03 Salah Rifai , Yoshua Bengio , Yann Dauphin , Pascal Vincent

Graph structured data provide two-fold information: graph structures and node attributes. Numerous graph-based algorithms rely on both information to achieve success in supervised tasks, such as node classification and link prediction.…

Machine Learning · Statistics 2019-07-24 Xu Chen , Siheng Chen , Huangjie Zheng , Jiangchao Yao , Kenan Cui , Ya Zhang , Ivor W. Tsang

Molecule generation is a challenging open problem in cheminformatics. Currently, deep generative approaches addressing the challenge belong to two broad categories, differing in how molecules are represented. One approach encodes molecular…

Machine Learning · Statistics 2020-11-02 Marco Podda , Davide Bacciu , Alessio Micheli

A recent Cell paper [Chang and Tsao, 2017] reports an interesting discovery. For the face stimuli generated by a pre-trained active appearance model (AAM), the responses of neurons in the areas of the primate brain that are responsible for…

Computer Vision and Pattern Recognition · Computer Science 2018-05-23 Tian Han , Jiawen Wu , Ying Nian Wu

Utilization of classification latent space information for downstream reconstruction and generation is an intriguing and a relatively unexplored area. In general, discriminative representations are rich in class-specific features but are…

Random graph models are frequently used as a controllable and versatile data source for experimental campaigns in various research fields. Generating such data-sets at scale is a non-trivial task as it requires design decisions typically…

Data Structures and Algorithms · Computer Science 2020-03-03 Manuel Penschuck , Ulrik Brandes , Michael Hamann , Sebastian Lamm , Ulrich Meyer , Ilya Safro , Peter Sanders , Christian Schulz

Traditionally, graph neural networks have been trained using a single observed graph. However, the observed graph represents only one possible realization. In many applications, the graph may encounter uncertainties, such as having…

Machine Learning · Computer Science 2024-10-10 See Hian Lee , Feng Ji , Kelin Xia , Wee Peng Tay

Deep generative models, such as Variational Autoencoders (VAEs) and Generative Adversarial Networks (GANs), have been employed widely in computational creativity research. However, such models discourage out-of-distribution generation to…

Computer Vision and Pattern Recognition · Computer Science 2022-05-27 Celia Cintas , Payel Das , Brian Quanz , Girmaw Abebe Tadesse , Skyler Speakman , Pin-Yu Chen

Most modern probabilistic generative models, such as the variational autoencoder (VAE), have certain indeterminacies that are unresolvable even with an infinite amount of data. Different tasks tolerate different indeterminacies, however…

Machine Learning · Statistics 2023-03-06 Quanhan Xi , Benjamin Bloem-Reddy

We use a tensor unfolding technique to prove a new identifiability result for discrete bipartite graphical models, which have a bipartite graph between an observed and a latent layer. This model family includes popular models such as…

Statistics Theory · Mathematics 2025-01-22 Yuqi Gu

We consider structure discovery of undirected graphical models from observational data. Inferring likely structures from few examples is a complex task often requiring the formulation of priors and sophisticated inference procedures.…

Machine Learning · Statistics 2017-08-04 Eugene Belilovsky , Kyle Kastner , Gaël Varoquaux , Matthew Blaschko

The goal of a generative model is to capture the distribution underlying the data, typically through latent variables. After training, these variables are often used as a new representation, more effective than the original features in a…

Machine Learning · Computer Science 2015-04-29 Maruan Al-Shedivat , Emre Neftci , Gert Cauwenberghs