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Scientific explanation often requires inferring maximally predictive features from a given data set. Unfortunately, the collection of minimal maximally predictive features for most stochastic processes is uncountably infinite. In such…

Statistical Mechanics · Physics 2017-05-31 Sarah E. Marzen , James P. Crutchfield

This report addresses state inference for hidden Markov models. These models rely on unobserved states, which often have a meaningful interpretation. This makes it necessary to develop diagnostic tools for quantification of state…

Statistics Theory · Mathematics 2018-10-26 Jean-Baptiste Durand , Y. Guédon

Modeling biological processes is a highly demanding task because not all processes are fully understood. Mathematical models allow us to test hypotheses about possible mechanisms of biological processes. The mathematical mechanisms…

Numerical Analysis · Mathematics 2023-12-11 Cordula Reisch , Hannah Burmester

Continuous-time Markov processes over finite state-spaces are widely used to model dynamical processes in many fields of natural and social science. Here, we introduce an maximum likelihood estimator for constructing such models from data…

Data Analysis, Statistics and Probability · Physics 2015-07-01 Robert T. McGibbon , Vijay S. Pande

To make sense of the world around us, we develop models, constructed to enable us to replicate, describe, and explain the behaviours we see. Focusing on the broad case of sequences of correlated random variables, i.e., classical stochastic…

Quantum Physics · Physics 2025-09-04 Paul M. Riechers , Thomas J. Elliott

This paper considers hidden Markov models where the observations are given as the sum of a latent state which lies in a general state space and some independent noise with unknown distribution. It is shown that these fully nonparametric…

Statistics Theory · Mathematics 2020-01-30 Elisabeth Gassiat , Sylvain Le Corff , Luc Lehéricy

Autoregressive language models achieve remarkable performance, yet a unified theory explaining their internal mechanisms, how training shapes representations, and why these representations support complex behavior remains incomplete. We…

Machine Learning · Computer Science 2026-05-14 Yifan Zhang

We discuss two parameterizations of models for marginal independencies for discrete distributions which are representable by bi-directed graph models, under the global Markov property. Such models are useful data analytic tools especially…

Machine Learning · Statistics 2008-01-10 Monia Lupparelli , Giovanni M. Marchetti , Wicher P. Bergsma

Autoregressive generative models -- including Transformers, recurrent neural networks, classical Kalman filters, state space models, and Mamba -- all generate sequences by sampling each output from a deterministic summary of the past,…

Statistical Mechanics · Physics 2026-04-17 Takahiro Sagawa

This paper presents a simple algorithm to check whether reachability probabilities in parametric Markov chains are monotonic in (some of) the parameters. The idea is to construct - only using the graph structure of the Markov chain and…

Logic in Computer Science · Computer Science 2019-07-22 Jip Spel , Sebastian Junges , Joost-Pieter Katoen

We consider Markov decision processes (MDPs) in which the transition probabilities and rewards belong to an uncertainty set parametrized by a collection of random variables. The probability distributions for these random parameters are…

Logic in Computer Science · Computer Science 2020-02-26 Murat Cubuktepe , Nils Jansen , Sebastian Junges , Joost-Pieter Katoen , Ufuk Topcu

We present a general model allowing static analysis based on abstract interpretation for systems of communicating processes. Our technique, inspired by Regular Model Checking, represents set of program states as lattice automata and…

Software Engineering · Computer Science 2016-11-29 Vincent Botbol , Emmanuel Chailloux , Tristan Le Gall

This paper deals with a unifying approach to the problems of computing the admissible sets of parametrical multi perturbations in appropriate bounded sets such that some fundamental properties of parameter-varying linear dynamic systems are…

Optimization and Control · Mathematics 2008-03-28 M. De la Sen

This article presents the complexity of reachability decision problems for parametric Markov decision processes (pMDPs), an extension to Markov decision processes (MDPs) where transitions probabilities are described by polynomials over a…

Logic in Computer Science · Computer Science 2020-09-29 Sebastian Junges , Joost-Pieter Katoen , Guillermo A. Pérez , Tobias Winkler

Semi-Markov processes play an important role in the effective description of partially accessible systems in stochastic thermodynamics. They occur, for instance, in coarse-graining procedures such as state lumping and when analyzing waiting…

Statistical Mechanics · Physics 2026-01-19 Alexander M. Maier , Jonas H. Fritz , Udo Seifert

State machine formalisms equipped with hierarchy and parallelism allow to compactly model complex system behaviours. Such models can then be transformed into executable code or inputs for model-based testing and verification techniques.…

Software Engineering · Computer Science 2017-10-24 Xavier Devroey , Gilles Perrouin , Maxime Cordy , Axel Legay , Pierre-Yves Schobbens , Patrick Heymans

We present an information-based uncertainty quantification method for general Markov Random Fields. Markov Random Fields (MRF) are structured, probabilistic graphical models over undirected graphs, and provide a fundamental unifying…

Machine Learning · Statistics 2021-07-20 Panagiota Birmpa , Markos A. Katsoulakis

We introduce partial Markov categories. In the same way that Markov categories encode stochastic processes, partial Markov categories encode stochastic processes with constraints, observations and updates. In particular, we prove a…

Logic in Computer Science · Computer Science 2025-04-21 Elena Di Lavore , Mario Román

The formalism of state estimation and hidden Markov models (HMMs) can simplify and clarify the discussion of stochastic thermodynamics in the presence of feedback and measurement errors. After reviewing the basic formalism, we use it to…

Statistical Mechanics · Physics 2015-11-13 John Bechhoefer

This article deals with stochastic processes endowed with the Markov (memoryless) property and evolving over general (uncountable) state spaces. The models further depend on a non-deterministic quantity in the form of a control input, which…

Systems and Control · Computer Science 2015-09-11 Sofie Haesaert , Robert Babuska , Alessandro Abate
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