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Microarray is a technology to quantitatively monitor the expression of large number of genes in parallel. It has become one of the main tools for global gene expression analysis in molecular biology research in recent years. The large…

Quantitative Methods · Quantitative Biology 2015-06-18 Min Xu

In this paper, we study the classification problem in which we have access to easily obtainable surrogate for true labels, namely complementary labels, which specify classes that observations do \textbf{not} belong to. Let $Y$ and $\bar{Y}$…

Machine Learning · Statistics 2018-08-09 Xiyu Yu , Tongliang Liu , Mingming Gong , Dacheng Tao

E-commerce platforms typically store and structure product information and search data in a hierarchy. Efficiently categorizing user search queries into a similar hierarchical structure is paramount in enhancing user experience on…

Information Retrieval · Computer Science 2024-03-12 Bing He , Sreyashi Nag , Limeng Cui , Suhang Wang , Zheng Li , Rahul Goutam , Zhen Li , Haiyang Zhang

Genome-wide association studies (GWAS) have successfully identified over two hundred thousand genotype-trait associations. Yet some challenges remain. First, complex traits are often associated with many single nucleotide polymorphisms…

Methodology · Statistics 2023-02-07 Aastha Khatiwada , Ayse Selen Yilmaz , Bethany J. Wolf , Maciej Pietrzak , Dongjun Chung

Many important classification problems in the real-world consist of a large number of closely related categories in a hierarchical structure or taxonomy. Hierarchical multi-label text classification (HMTC) with higher accuracy over large…

Computation and Language · Computer Science 2022-04-19 Pengfei Gao , Jingpeng Zhao , Yinglong Ma , Ahmad Tanvir , Beihong Jin

False discovery rate (FDR) procedures provide misleading inference when testing multiple null hypotheses with heterogeneous multinomial data. For example, in the motivating study the goal is to identify species of bacteria near the roots of…

Methodology · Statistics 2015-11-05 Joshua Habiger , David Watts , Michael Anderson

Several multi-pass algorithms have been proposed for Association Rule Mining from static repositories. However, such algorithms are incapable of online processing of transaction streams. In this paper we introduce an efficient single-pass…

Databases · Computer Science 2010-04-28 M . V. Vijaya Saradhi , B. R. Sastry , P. Satish

This paper proposes a novel training scheme for fast matching models in Search Ads, which is motivated by the real challenges in model training. The first challenge stems from the pursuit of high throughput, which prohibits the deployment…

Information Retrieval · Computer Science 2019-04-23 Xue Li , Zhipeng Luo , Hao Sun , Jianjin Zhang , Weihao Han , Xianqi Chu , Liangjie Zhang , Qi Zhang

Manual annotation of the labeled data for relation extraction is time-consuming and labor-intensive. Semi-supervised methods can offer helping hands for this problem and have aroused great research interests. Existing work focuses on…

Computation and Language · Computer Science 2020-10-23 Wanli Li , Tieyun Qian

Missing data has a ubiquitous presence in real-life applications of machine learning techniques. Imputation methods are algorithms conceived for restoring missing values in the data, based on other entries in the database. The choice of the…

Machine Learning · Computer Science 2017-08-16 Unai Garciarena , Roberto Santana , Alexander Mendiburu

Methods of pattern recognition and machine learning are applied extensively in science, technology, and society. Hence, any advances in related theory may translate into large-scale impact. Here we explore how algorithmic information…

Machine Learning · Computer Science 2023-04-05 Kamaludin Dingle , Pau Batlle , Houman Owhadi

Hierarchical text classification (HTC) is a complex subtask under multi-label text classification, characterized by a hierarchical label taxonomy and data imbalance. The best-performing models aim to learn a static representation by…

Computation and Language · Computer Science 2024-02-23 Vidit Jain , Mukund Rungta , Yuchen Zhuang , Yue Yu , Zeyu Wang , Mu Gao , Jeffrey Skolnick , Chao Zhang

Since the introduction of the SemEval 2020 Task 11 (Martino et al., 2020a), several approaches have been proposed in the literature for classifying propaganda based on the rhetorical techniques used to influence readers. These methods,…

Computation and Language · Computer Science 2023-06-01 Anni Chen , Bhuwan Dhingra

The need for accurate yield estimates for viticulture is becoming more important due to increasing competition in the wine market worldwide. One of the most promising methods to estimate the harvest is berry counting, as it can be…

Computer Vision and Pattern Recognition · Computer Science 2022-03-28 Jana Kierdorf , Immanuel Weber , Anna Kicherer , Laura Zabawa , Lukas Drees , Ribana Roscher

Taxonomy is a hierarchically structured knowledge graph that plays a crucial role in machine intelligence. The taxonomy expansion task aims to find a position for a new term in an existing taxonomy to capture the emerging knowledge in the…

Computation and Language · Computer Science 2022-04-27 Suyuchen Wang , Ruihui Zhao , Xi Chen , Yefeng Zheng , Bang Liu

Classifier chains have recently been proposed as an appealing method for tackling the multi-label classification task. In addition to several empirical studies showing its state-of-the-art performance, especially when being used in its…

Machine Learning · Computer Science 2019-06-10 Robin Senge , Juan José del Coz , Eyke Hüllermeier

Massively multi-label prediction/classification problems arise in environments like health-care or biology where very precise predictions are useful. One challenge with massively multi-label problems is that there is often a long-tailed…

Machine Learning · Computer Science 2019-05-30 Ethan Steinberg , Peter J. Liu

Multi-label classification has received considerable interest in recent years. Multi-label classifiers have to address many problems including: handling large-scale datasets with many instances and a large set of labels, compensating…

Machine Learning · Computer Science 2016-06-21 Amirhossein Akbarnejad , Mahdieh Soleymani Baghshah

In the field of image classification, existing methods often struggle with biased or ambiguous data, a prevalent issue in real-world scenarios. Current strategies, including semi-supervised learning and class blending, offer partial…

Computer Vision and Pattern Recognition · Computer Science 2024-04-30 Lars Schmarje , Vasco Grossmann , Claudius Zelenka , Johannes Brünger , Reinhard Koch

Public repositories for genome and proteome annotations, such as the Gene Ontology (GO), rarely stores negative annotations, i.e. proteins not possessing a given function. This leaves undefined or ill defined the set of negative examples,…

Computational Engineering, Finance, and Science · Computer Science 2018-05-24 Maryam Sepehri , Marco Frasca