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Supervised classification heavily depends on datasets annotated by humans. However, in subjective tasks such as toxicity classification, these annotations often exhibit low agreement among raters. Annotations have commonly been aggregated…

Computation and Language · Computer Science 2024-05-17 Negar Mokhberian , Myrl G. Marmarelis , Frederic R. Hopp , Valerio Basile , Fred Morstatter , Kristina Lerman

Hierarchical classification problems are commonly seen in practice. However, most existing methods do not fully utilize the hierarchical information among class labels. In this paper, a novel label embedding approach is proposed, which…

Methodology · Statistics 2020-07-23 Yiwei Fan , Xiaoling Lu , Yufeng Liu , Junlong Zhao

Accurately annotating and controlling protein function from sequence data remains a major challenge, particularly within homologous families where annotated sequences are scarce and structural variation is minimal. We present a two-stage…

Quantitative Methods · Quantitative Biology 2025-07-22 Lorenzo Rosset , Martin Weigt , Francesco Zamponi

Advanced omics technologies and facilities generate a wealth of valuable data daily; however, the data often lacks the essential metadata required for researchers to find and search them effectively. The lack of metadata poses a significant…

Hierarchical multi-label text classification aims to classify the input text into multiple labels, among which the labels are structured and hierarchical. It is a vital task in many real world applications, e.g. scientific literature…

Computation and Language · Computer Science 2023-08-01 Rundong Liu , Wenhan Liang , Weijun Luo , Yuxiang Song , He Zhang , Ruohua Xu , Yunfeng Li , Ming Liu

Missing data is a common problem in time series data. Most methods for imputation ignore label information pertaining to the time series even if that information exists. In this paper, we provide a framework for missing data imputation in…

International comparisons of hierarchical time series data sets based on survey data, such as annual country-level estimates of school enrollment rates, can suffer from large amounts of missing data due to differing coverage of surveys…

Methodology · Statistics 2025-03-31 Daphne H. Liu , Adrian E. Raftery

Thanks to the increasing growth of computational power and data availability, the research in machine learning has advanced with tremendous rapidity. Nowadays, the majority of automatic decision making systems are based on data. However, it…

Machine Learning · Computer Science 2021-01-28 Elena Beretta , Antonio Vetrò , Bruno Lepri , Juan Carlos De Martin

Evidence suggests that networks trained on large datasets generalize well not solely because of the numerous training examples, but also class diversity which encourages learning of enriched features. This raises the question of whether…

Sequence alignment forms the basis of many methods for functional annotation by phylogenetic comparison, but becomes unreliable in the `twilight' regions of high sequence divergence and short gene length. Here we perform a cross-species…

Molecular Networks · Quantitative Biology 2007-07-10 Michal Kolář , Michael Lässig , Johannes Berg

Human data labeling is an important and expensive task at the heart of supervised learning systems. Hierarchies help humans understand and organize concepts. We ask whether and how concept hierarchies can inform the design of annotation…

Human-Computer Interaction · Computer Science 2023-02-24 Rickard Stureborg , Bhuwan Dhingra , Jun Yang

Active learning is a promising paradigm to reduce the labeling cost by strategically requesting labels to improve model performance. However, existing active learning methods often rely on expensive acquisition function to compute,…

Machine Learning · Computer Science 2023-10-27 Zixin Ding , Si Chen , Ruoxi Jia , Yuxin Chen

Few/Zero-shot learning is a big challenge of many classifications tasks, where a classifier is required to recognise instances of classes that have very few or even no training samples. It becomes more difficult in multi-label…

Machine Learning · Computer Science 2020-10-16 Jueqing Lu , Lan Du , Ming Liu , Joanna Dipnall

As research interests in medical image analysis become increasingly fine-grained, the cost for extensive annotation also rises. One feasible way to reduce the cost is to annotate with coarse-grained superclass labels while using limited…

Computer Vision and Pattern Recognition · Computer Science 2023-07-04 Linrui Dai , Wenhui Lei , Xiaofan Zhang

We investigate model based classification with partially labelled training data. In many biostatistical applications, labels are manually assigned by experts, who may leave some observations unlabelled due to class uncertainty. We analyse…

Methodology · Statistics 2019-04-08 Daniel Ahfock , Geoffrey J. McLachlan

Due to the expensive costs of collecting labels in multi-label classification datasets, partially annotated multi-label classification has become an emerging field in computer vision. One baseline approach to this task is to assume…

Computer Vision and Pattern Recognition · Computer Science 2023-04-05 Youngwook Kim , Jae Myung Kim , Jieun Jeong , Cordelia Schmid , Zeynep Akata , Jungwoo Lee

Multi-label text classification refers to the problem of assigning each given document its most relevant labels from the label set. Commonly, the metadata of the given documents and the hierarchy of the labels are available in real-world…

Computation and Language · Computer Science 2023-10-24 Yu Zhang , Zhihong Shen , Yuxiao Dong , Kuansan Wang , Jiawei Han

Image classification is one of the most important areas in computer vision. Hierarchical multi-label classification applies when a multi-class image classification problem is arranged into smaller ones based upon a hierarchy or taxonomy.…

Computer Vision and Pattern Recognition · Computer Science 2022-09-14 Khondaker Tasrif Noor , Antonio Robles-Kelly , Brano Kusy

For many prediction tasks, stakeholders desire not only predictions but also supporting evidence that a human can use to verify its correctness. However, in practice, additional annotations marking supporting evidence may only be available…

Computation and Language · Computer Science 2020-11-04 Danish Pruthi , Bhuwan Dhingra , Graham Neubig , Zachary C. Lipton

Time series classification stands as a pivotal and intricate challenge across various domains, including finance, healthcare, and industrial systems. In contemporary research, there has been a notable upsurge in exploring feature extraction…

Machine Learning · Computer Science 2024-07-24 Alireza Keshavarzian , Shahrokh Valaee
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