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Magnetic Resonance Imaging suffers from substantial data heterogeneity and the absence of standardized contrast labels across scanners, protocols, and institutions, which severely limits large-scale automated analysis. A unified…

Computer Vision and Pattern Recognition · Computer Science 2025-11-04 Mehmet Yigit Avci , Pedro Borges , Virginia Fernandez , Paul Wright , Mehmet Yigitsoy , Sebastien Ourselin , Jorge Cardoso

We propose a method to directly measure the complex phase distribution, superfluid density and velocity field in an ultracold atomic superfluid. The method consists of mapping the momentum distribution of the gas to real space using…

Quantum Gases · Physics 2019-11-26 Puneet A. Murthy , Selim Jochim

We suggest a new multimodal imaging technique for quantitatively measuring the integral (thickness-average) refractive index of the nuclei of live biological cells in suspension. For this aim, we combined quantitative phase microscopy with…

The application of state-of-the-art machine learning techniques to statistical physic problems has seen a surge of interest for their ability to discriminate phases of matter by extracting essential features in the many-body wavefunction or…

Strongly Correlated Electrons · Physics 2017-07-04 Peter Broecker , Fakher F. Assaad , Simon Trebst

Micro-scale flow in cylindrical geometries can harness chaotic advection to perform complex thermally activated biochemical reactions such as the polymerase chain reaction (PCR). We have applied a 3D computational fluid dynamics model to…

Fluid Dynamics · Physics 2016-05-24 Aashish Priye , Radha Muddu , Yassin Hassan , Victor Ugaz

Cellular electron cryo-tomography enables the 3D visualization of cellular organization in the near-native state and at submolecular resolution. However, the contents of cellular tomograms are often complex, making it difficult to…

Quantitative Methods · Quantitative Biology 2017-12-29 Xiangrui Zeng , Miguel Ricardo Leung , Tzviya Zeev-Ben-Mordehai , Min Xu

The characterization of white blood cells (WBCs) is crucial for blood analyses and disease diagnoses. However, current standard techniques rely on cell labeling, a process which imposes significant limitations. Here we present…

Biological Physics · Physics 2015-05-12 Jonghee Yoon , Kyoohyun Kim , HyunJoo Park , Chulhee Choi , Seongsoo Jang , YongKeun Park

Understanding transcription factor dynamics is crucial for unraveling the regulatory mechanisms of gene expression that underpin cellular function and development. Measurements of transcription factor subcellular movements are essential for…

Quantitative Methods · Quantitative Biology 2025-03-20 Sharva V. Hiremath , Etika Goyal , Gregory T. Reeves , Cranos M. Williams

Gapped fracton phases of matter generalize the concept of topological order and broaden our fundamental understanding of entanglement in quantum many-body systems. However, their analytical or numerical description beyond exactly solvable…

Strongly Correlated Electrons · Physics 2023-05-30 Guo-Yi Zhu , Ji-Yao Chen , Peng Ye , Simon Trebst

Quantum phase transitions in Rydberg atom arrays present significant opportunities for studying many-body physics, yet distinguishing between different ordered phases without explicit order parameters remains challenging. We present a…

Quantum Physics · Physics 2025-10-28 Hemish Ahuja , Samradh Bhardwaj , Kirti Dhir , Roman Bagdasarian , Ziwoong Jang

This work presents an optical neuromorphic imaging and processing cytometry system that integrates an excitable VCSEL-based time-delayed (TD) extreme learning machine with an event-based 2D camera. The proposed system is designed for the…

Optics · Physics 2025-05-20 M. Skontranis , G. Moustakas , A. Bogris , C. Mesaritakis

Here we report a method for visualization of volumetric structural information of live biological samples with no exogenous contrast agents. The process is made possible through a technique that involves generation, synthesis and analysis…

Promoted by the advent of coherent synchrotron light sources, phase contrast tomography allows to resolve three-dimensional variations of an unknown sample's complex refractive index from scattering intensities recorded at different…

Numerical Analysis · Mathematics 2015-02-19 Simon Maretzke

We present a quantum algorithmic framework for simulating phase-contrast transmission electron microscopy (CTEM) image formation using a fault-tolerant, gate-based quantum circuit model. The electron wavefield on an $N\times N$ grid is…

Quantum Physics · Physics 2026-02-17 Sean D. Lam , Roberto dos Reis

The structural complexity and instability of many interference phase microscopy methods are the major obstacles toward high-precision phase measurement. In this vein, improving more efficient configurations as well as proposing new methods…

Optics · Physics 2020-01-08 Samira Ebrahimi , Masoomeh Dashtdar

We demonstrate a three-dimensional (3D) optical diffraction tomographic technique with optimal frequency combination (OFC-ODT) for the 3D quantitative phase imaging of unlabeled specimens. Three sets of through-focus intensity images are…

Optics · Physics 2018-03-06 Jiaji Li , Qian Chen Jiasong Sun , Jialin Zhang , Junyi Ding , Chao Zuo

A 3D tomographic reconstruction technique is described for inversion of a set of limited-angle high-resolution 2D visible light emission projections (extended in the vertical and toroidal directions) of global MHD eigenmodes in the H-1NF…

Plasma Physics · Physics 2014-08-29 S. R. Haskey , B. D. Blackwell , B. Seiwald , J. Howard

Advances in fluorescence microscopy enable acquisition of 3D image volumes with better image quality and deeper penetration into tissue. Segmentation is a required step to characterize and analyze biological structures in the images and…

Computer Vision and Pattern Recognition · Computer Science 2019-04-16 Chichen Fu , Soonam Lee , David Joon Ho , Shuo Han , Paul Salama , Kenneth W. Dunn , Edward J. Delp

We introduce a phase imaging mechanism for scanning transmission electron microscopy that exploits the complementary intensity changes of transmitted disks at different scattering angles. For scanning transmission electron microscopy, this…

Instrumentation and Detectors · Physics 2023-07-06 Binbin Wang , David W. McComb

Phase-space representations are a family of methods for dynamics of both bosonic and fermionic systems, that work by mapping the system's density matrix to a quasi-probability density and the Liouville-von Neumann equation of the…

Quantum Gases · Physics 2023-04-24 F. Rousse , O. Eriksson , M. Ogren