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We present the software design of Gridap, a novel finite element library written exclusively in the Julia programming language, which is being used by several research groups world-wide to simulate complex physical phenomena such as…

Mathematical Software · Computer Science 2022-04-13 Francesc Verdugo , Santiago Badia

GitHub is the most widely used social, distributed version control system. It has around 10 million registered users and hosts over 16 million public repositories. Its user base is also very active as GitHub ranks in the top 100 Alexa most…

Programming Languages · Computer Science 2016-03-02 Amirali Sanatinia , Guevara Noubir

R packages are the fundamental units of reproducible code in R, providing a mechanism for distributing user-developed code, documentation, and data. Docker is a virtualization technology that allows applications and their dependencies to be…

Quantitative Methods · Quantitative Biology 2023-03-23 V. P. Nagraj , Stephen D. Turner

In recent years, heterogeneous computing has emerged as the vital way to increase computers? performance and energy efficiency by combining diverse hardware devices, such as Graphics Processing Units (GPUs) and Field Programmable Gate…

Programming Languages · Computer Science 2020-11-02 Michail Papadimitriou , Juan Fumero , Athanasios Stratikopoulos , Foivos S. Zakkak , Christos Kotselidis

Interactive development environments like Jupyter Notebooks enable incremental coding through cells with immediate feedback, but their linear structure and global namespace limit scalability for large software projects. We present CodePod,…

Software Engineering · Computer Science 2025-08-01 Hebi Li , Forrest Sheng Bao , Qi Xiao , Jin Tian

Desktop GIS applications, such as ArcGIS and QGIS, provide tools essential for conducting suitability analysis, an activity that is central in formulating a land-use plan. But, when it comes to building complicated land-use suitability…

Computers and Society · Computer Science 2021-07-06 Changjie Chen , Jasmeet Judge , David Hulse

JuMP is an open-source modeling language that allows users to express a wide range of optimization problems (linear, mixed-integer, quadratic, conic-quadratic, semidefinite, and nonlinear) in a high-level, algebraic syntax. JuMP takes…

Optimization and Control · Mathematics 2017-05-08 Iain Dunning , Joey Huchette , Miles Lubin

Nonconvex mixed-integer nonlinear programs (MINLPs) represent a challenging class of optimization problems that often arise in engineering and scientific applications. Because of nonconvexities, these programs are typically solved with…

Optimization and Control · Mathematics 2018-06-27 Ole Kröger , Carleton Coffrin , Hassan Hijazi , Harsha Nagarajan

The \pkg{pintervals} package aims to provide a unified framework for constructing prediction intervals and calibrating predictions in a model-agnostic setting using set-aside calibration data. It comprises routines to construct conformal as…

Applications · Statistics 2026-01-08 David Randahl , Anders Hjort , Jonathan P. Williams

In the rapidly evolving software development landscape, Python stands out for its simplicity, versatility, and extensive ecosystem. Python packages, as units of organization, reusability, and distribution, have become a pressing concern,…

Software Engineering · Computer Science 2025-09-05 Haowei Quan , Junjie Wang , Xinzhe Li , Terry Yue Zhuo , Xiao Chen , Xiaoning Du

This paper presents the design and implementation of Juniper: a functional reactive programming language (FRP) targeting the Arduino and related microcontroller systems. Juniper provides a number of high level features, including parametric…

Programming Languages · Computer Science 2019-12-02 Caleb Helbling , Samuel Z Guyer

We present Groebner.jl, a Julia package for computing Groebner bases with the F4 algorithm. Groebner.jl is an efficient, portable, and open-source software. Groebner.jl works over integers modulo a prime and over the rationals, supports…

Mathematical Software · Computer Science 2024-02-13 Alexander Demin , Shashi Gowda

We present Glyph - a Python package for genetic programming based symbolic regression. Glyph is designed for usage let by numerical simulations let by real world experiments. For experimentalists, glyph-remote provides a separation of…

Mathematical Software · Computer Science 2018-03-22 Markus Quade , Julien Gout , Markus Abel

Computer-aided design (CAD) has become a critical element in the creation of nanopatterned structures and devices. In particular, with the increased adoption of easy-to-learn programming languages like Python there has been a significant…

Superconductivity · Physics 2023-08-17 A. N. McCaughan , A. M. Tait , S. M. Buckley , D. M. Oh , J. T. Chiles , J. M. Shainline , S. W. Nam

In recent years, utilization of heterogeneous hardware other than small core CPU such as GPU, FPGA or many core CPU is increasing. However, when using heterogeneous hardware, barriers of technical skills such as CUDA are high. Based on…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-10 Yoji Yamato

Polylab is a MATLAB toolbox for multivariate polynomial scalars and polynomial matrices with a unified symbolic-numeric interface across CPU and GPU-oriented backends. The software exposes three aligned classes: MPOLY for CPU execution,…

Mathematical Software · Computer Science 2026-04-10 Yi-Shuai Niu , Shing-Tung Yau

Like many groups considering the new programming language Julia, we faced the challenge of accessing the algorithms that we develop in Julia from R. Therefore, we developed the R package JuliaConnectoR, available from the CRAN repository…

Mathematical Software · Computer Science 2021-03-31 Stefan Lenz , Maren Hackenberg , Harald Binder

PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data. PANDA was originally coded in C++. In this application…

Quantitative Methods · Quantitative Biology 2016-07-14 David G. P. van IJzendoorn , Kimberly Glass , John Quackenbush , Marieke L. Kuijjer

AcceleratedKernels.jl is introduced as a backend-agnostic library for parallel computing in Julia, natively targeting NVIDIA, AMD, Intel, and Apple accelerators via a unique transpilation architecture. Written in a unified, compact…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-23 Andrei-Leonard Nicusan , Dominik Werner , Simon Branford , Simon Hartley , Andrew J. Morris , Kit Windows-Yule

Jet reconstruction remains a critical task in the analysis of data from HEP colliders. We describe in this paper a new, highly performant, Julia package for jet reconstruction, JetReconstruction.jl, which integrates into the growing…

High Energy Physics - Experiment · Physics 2025-12-02 Graeme Andrew Stewart. Sanmay Ganguly , Sattwamo Ghosh , Philippe Gras , Atell Krasnopolski