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In recent years, protein-text models have gained significant attention for their potential in protein generation and understanding. Current approaches focus on integrating protein-related knowledge into large language models through…

Computation and Language · Computer Science 2025-11-11 Juntong Wu , Zijing Liu , He Cao , Hao Li , Bin Feng , Zishan Shu , Ke Yu , Li Yuan , Yu Li

Language models have become increasingly powerful tools for formal mathematical reasoning. However, most existing approaches rely exclusively on either large general-purpose models or smaller specialized models, each with distinct…

Artificial Intelligence · Computer Science 2025-07-22 Nicolas Wischermann , Claudio Mayrink Verdun , Gabriel Poesia , Francesco Noseda

Schema matching is a crucial task in data integration, involving the alignment of a source schema with a target schema to establish correspondence between their elements. This task is challenging due to textual and semantic heterogeneity,…

Databases · Computer Science 2024-05-31 Eitam Sheetrit , Menachem Brief , Moshik Mishaeli , Oren Elisha

Prompts are the interface for eliciting the capabilities of large language models (LLMs). Understanding their structure and components is critical for analyzing LLM behavior and optimizing performance. However, the field lacks a…

Computation and Language · Computer Science 2026-01-27 Sullam Jeoung , Yueyan Chen , Yi Zhang , Shuai Wang , Haibo Ding , Lin Lee Cheong

Since the advent of various pre-trained large language models, extracting structured knowledge from scientific text has experienced a revolutionary change compared with traditional machine learning or natural language processing techniques.…

Computational Physics · Physics 2025-10-27 Aritra Roy , Enrico Grisan , John Buckeridge , Chiara Gattinoni

Simile interpretation is a crucial task in natural language processing. Nowadays, pre-trained language models (PLMs) have achieved state-of-the-art performance on many tasks. However, it remains under-explored whether PLMs can interpret…

Computation and Language · Computer Science 2022-03-17 Qianyu He , Sijie Cheng , Zhixu Li , Rui Xie , Yanghua Xiao

Procedural planning, which entails decomposing a high-level goal into a sequence of temporally ordered steps, is an important yet intricate task for machines. It involves integrating common-sense knowledge to reason about complex and often…

Document-level relation extraction (RE) aims to extract the relations between entities from the input document that usually containing many difficultly-predicted entity pairs whose relations can only be predicted through relational…

Computation and Language · Computer Science 2022-11-29 Liang Zhang , Jinsong Su , Yidong Chen , Zhongjian Miao , Zijun Min , Qingguo Hu , Xiaodong Shi

Pre-trained language models (PLMs) were considered to be able to store relational knowledge present in the training data. However, some relational knowledge seems to be discarded unsafely in PLMs due to \textbf{report bias}: low-frequency…

Computation and Language · Computer Science 2023-05-25 Hongbo Zhang , Xiang Wan , Benyou Wang

Reasoning in Large Language Models (LLMs) often suffers from inefficient long chain-of-thought traces with redundant self-exploration and validation, which inflate computational costs and even degrade performance. Inspired by human…

Artificial Intelligence · Computer Science 2026-02-17 Qianyue Wang , Jinwu Hu , Huanxiang Lin , Bolin Chen , Zhiquan Wen , Yaofo Chen , Yu Rong , Mingkui Tan

We propose a neural language model capable of unsupervised syntactic structure induction. The model leverages the structure information to form better semantic representations and better language modeling. Standard recurrent neural networks…

Computation and Language · Computer Science 2018-02-20 Yikang Shen , Zhouhan Lin , Chin-Wei Huang , Aaron Courville

We present LLMStructBench, a novel benchmark for evaluating Large Language Models (LLMs) on extracting structured data and generating valid JavaScript Object Notation (JSON) outputs from natural-language text. Our open dataset comprises…

Computation and Language · Computer Science 2026-02-17 Sönke Tenckhoff , Mario Koddenbrock , Erik Rodner

This paper presents an empirical study of conversational question reformulation (CQR) with sequence-to-sequence architectures and pretrained language models (PLMs). We leverage PLMs to address the strong token-to-token independence…

Computation and Language · Computer Science 2020-04-07 Sheng-Chieh Lin , Jheng-Hong Yang , Rodrigo Nogueira , Ming-Feng Tsai , Chuan-Ju Wang , Jimmy Lin

Recent work has demonstrated that semantics specified by pretraining data influence how representations of different concepts are organized in a large language model (LLM). However, given the open-ended nature of LLMs, e.g., their ability…

Computation and Language · Computer Science 2025-05-05 Core Francisco Park , Andrew Lee , Ekdeep Singh Lubana , Yongyi Yang , Maya Okawa , Kento Nishi , Martin Wattenberg , Hidenori Tanaka

How do artificial neural networks bind concepts to form complex semantic structures? Here, we propose a simple neural code, whereby the existence and the type of relations between entities are represented by the distance and the direction…

Computation and Language · Computer Science 2026-05-19 Pablo J. Diego-Simón , Pierre Orhan , Emmanuel Chemla , Yair Lakretz , Jean-Rémi King

Protocol standardization and sharing are crucial for reproducibility in life sciences. In spite of numerous efforts for standardized protocol description, adherence to these standards in literature remains largely inconsistent. Curation of…

Quantitative Methods · Quantitative Biology 2023-12-12 Shuo Jiang , Daniel Evans-Yamamoto , Dennis Bersenev , Sucheendra K. Palaniappan , Ayako Yachie-Kinoshita

Logs are important in modern software development with runtime information. Log parsing is the first step in many log-based analyses, that involve extracting structured information from unstructured log data. Traditional log parsers face…

Software Engineering · Computer Science 2024-04-30 Zeyang Ma , An Ran Chen , Dong Jae Kim , Tse-Hsun Chen , Shaowei Wang

Personality recognition from text is typically cast as hard-label classification, which obscures the graded, prototype-like nature of human personality judgments. We present ProtoMBTI, a cognitively aligned framework for MBTI inference that…

Computation and Language · Computer Science 2025-12-30 Haoyuan Li , Yuanbo Tong , Yuchen Li , Zirui Wang , Chunhou Liu , Jiamou Liu

Probing is a popular method to discern what linguistic information is contained in the representations of pre-trained language models. However, the mechanism of selecting the probe model has recently been subject to intense debate, as it is…

Computation and Language · Computer Science 2022-07-06 Jiaoda Li , Ryan Cotterell , Mrinmaya Sachan

We study LLMs for tabular prediction with mixed text, numeric, and categorical fields. We introduce TabGemma, a schema-agnostic in-context learner that treats rows as sequences and tackles two practical hurdles when adapting pretrained LLMs…

Machine Learning · Computer Science 2025-11-06 Günther Schindler , Maximilian Schambach , Michael Medek , Sam Thelin