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Biometrics-related research has been accelerated significantly by deep learning technology. However, there are limited open-source resources to help researchers evaluate their deep learning-based biometrics algorithms efficiently,…

Computer Vision and Pattern Recognition · Computer Science 2019-02-04 Xiang Xu , Ioannis A. Kakadiaris

Development of scoring functions (SFs) used to predict protein-ligand binding energies requires high-quality 3D structures and binding assay data for training and testing their parameters. In this work, we show that one of the widely-used…

Biological Physics · Physics 2025-03-10 Yingze Wang , Kunyang Sun , Jie Li , Xingyi Guan , Oufan Zhang , Dorian Bagni , Teresa Head-Gordon

A wide range of scientific imaging datasets benefit from human inspection for purposes ranging from prosaic-such as fault identification and quality inspection-to profound, enabling the discovery of new phenomena. As such, these datasets…

Instrumentation and Methods for Astrophysics · Physics 2025-07-04 Ryan Walker , Andi Kisare , Lindsey Bleem

Scientific results in high-energy physics and in many other fields often rely on complex software stacks. In order to support reproducibility and scrutiny of the results, it is good practice to use open source software and to cite software…

Software Engineering · Computer Science 2014-07-14 Jakob Blomer , Dario Berzano , Predrag Buncic , Ioannis Charalampidis , Gerardo Ganis , George Lestaris , René Meusel

Many numerical simulation tools have been developed and are on the market, but there is still a strong need for appropriate tools capable of simulating multi-field problems, especially in aeroacoustics. Therefore, openCFS provides an…

Computational Engineering, Finance, and Science · Computer Science 2026-01-12 Andreas Wurzinger , Patrick Heidegger , Stefan Schoder

World foundation models, which simulate the physical world by predicting future states from current observations and inputs, have become central to many applications in physical intelligence, including autonomous driving and robotics.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-11 Wenyan Cong , Hanqing Zhu , Peihao Wang , Bangya Liu , Dejia Xu , Kevin Wang , David Z. Pan , Yan Wang , Zhiwen Fan , Zhangyang Wang

While monomer protein structure prediction tools boast impressive accuracy, the prediction of protein complex structures remains a daunting challenge in the field. This challenge is particularly pronounced in scenarios involving complexes…

Biomolecules · Quantitative Biology 2024-05-20 Xiaomin Fang , Jie Gao , Jing Hu , Lihang Liu , Yang Xue , Xiaonan Zhang , Kunrui Zhu

A thorough understanding of the issues surrounding the determination of parton distributions is crucial due to their importance to calculations of LHC observables. However, it is still not fully understood how much of an impact…

High Energy Physics - Phenomenology · Physics 2014-09-16 Christopher S. Deans

Python is a particularly appealing language to carry out data analysis, owing in part to its user-friendly character as well as its access to well maintained and powerful libraries like NumPy and SciPy. Still, for the purpose of analyzing…

High Energy Physics - Lattice · Physics 2024-02-01 Luis Altenkort , David Anthony Clarke , Jishnu Goswami , Hauke Sandmeyer

Recent advancements in model pruning have focused on developing new algorithms and improving upon benchmarks. However, the practical application of these algorithms across various models and platforms remains a significant challenge. To…

Machine Learning · Computer Science 2024-04-15 Dongdong Ren , Wenbin Li , Tianyu Ding , Lei Wang , Qi Fan , Jing Huo , Hongbing Pan , Yang Gao

Continuously comparing theory predictions to experimental data is a common task in analysis of particle physics such as fitting parton distribution functions (PDFs). However, typically, both the computation of scattering amplitudes and the…

High Energy Physics - Phenomenology · Physics 2023-03-14 Andrea Barontini , Alessandro Candido , Juan M. Cruz-Martinez , Felix Hekhorn , Christopher Schwan

RooFit is a toolkit for statistical modelling and fitting, and together with RooStats it is used for measurements and statistical tests by most experiments in particle physics. Since one year, RooFit is being modernised. In this talk,…

Data Analysis, Statistics and Probability · Physics 2022-09-21 Stephan Hageboeck

A Python package for the analysis of dark-field X-ray microscopy (DFXM) and rocking curve imaging (RCI) data is presented. \textit{darfix} provides a set of data processing and visualization tools that can be either imported as library…

Transformer model architectures have garnered immense interest lately due to their effectiveness across a range of domains like language, vision and reinforcement learning. In the field of natural language processing for example,…

Machine Learning · Computer Science 2022-03-15 Yi Tay , Mostafa Dehghani , Dara Bahri , Donald Metzler

A master-worker architecture is presented for obtaining combined experimental results through joint fits of datasets from several experiments. The design of the architecture allows such joint fits to be performed keeping the data separated,…

Data Analysis, Statistics and Probability · Physics 2018-04-10 Eli Ben-Haim , René Brun , Bertrand Echenard , Thomas E. Latham

This paper presents Geomancer, an open-source framework for geospatial feature engineering. It simplifies the acquisition of geospatial attributes for downstream, large-scale machine learning tasks. Geomancer leverages any geospatial…

The open-source python package diffpy.mpdf, part of the DiffPy suite for diffraction and pair distribution function analysis, provides a user-friendly approach for performing magnetic pair distribution function (mPDF) analysis. The package…

We present ensmallen, a fast and flexible C++ library for mathematical optimization of arbitrary user-supplied functions, which can be applied to many machine learning problems. Several types of optimizations are supported, including…

Mathematical Software · Computer Science 2018-12-11 Shikhar Bhardwaj , Ryan R. Curtin , Marcus Edel , Yannis Mentekidis , Conrad Sanderson

In the domain of Document AI, parsing semi-structured image form is a crucial Key Information Extraction (KIE) task. The advent of pre-trained multimodal models significantly empowers Document AI frameworks to extract key information from…

Computation and Language · Computer Science 2024-12-19 Xianfu Cheng , Hang Zhang , Jian Yang , Xiang Li , Weixiao Zhou , Fei Liu , Kui Wu , Xiangyuan Guan , Tao Sun , Xianjie Wu , Tongliang Li , Zhoujun Li

SweepFinder is a popular program that implements a powerful likelihood-based method for detecting recent positive selection, or selective sweeps. Here, we present SweepFinder2, an extension of SweepFinder with increased sensitivity and…

Populations and Evolution · Quantitative Biology 2015-05-28 Michael DeGiorgio , Christian D. Huber , Melissa J. Hubisz , Ines Hellmann , Rasmus Nielsen
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