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Masked language modeling (MLM), a self-supervised pretraining objective, is widely used in natural language processing for learning text representations. MLM trains a model to predict a random sample of input tokens that have been replaced…

Computation and Language · Computer Science 2021-09-07 Atsuki Yamaguchi , George Chrysostomou , Katerina Margatina , Nikolaos Aletras

The need for analysis of toxicity in new drug candidates and the requirement of doing it fast have asked the consideration of scientists towards the use of artificial intelligence tools to examine toxicity levels and to develop models to a…

Quantitative Methods · Quantitative Biology 2021-01-27 Mriganka Nath , Subhasish Goswami

Natural language understanding has recently seen a surge of progress with the use of sentence encoders like ELMo (Peters et al., 2018a) and BERT (Devlin et al., 2019) which are pretrained on variants of language modeling. We conduct the…

Recent innovations in self-supervised representation learning have led to remarkable advances in natural language processing. That said, in the speech processing domain, self-supervised representation learning-based systems are not yet…

Computation and Language · Computer Science 2022-03-02 Hagai Aronowitz , Itai Gat , Edmilson Morais , Weizhong Zhu , Ron Hoory

Proteins adopt multiple structural conformations to perform their diverse biological functions, and understanding these conformations is crucial for advancing drug discovery. Traditional physics-based simulation methods often struggle with…

Biomolecules · Quantitative Biology 2025-03-14 Jiarui Lu , Xiaoyin Chen , Stephen Zhewen Lu , Chence Shi , Hongyu Guo , Yoshua Bengio , Jian Tang

The quadratic complexity of attention imposes severe memory and computational bottlenecks on Large Language Model (LLM) inference. This challenge is particularly acute for emerging agentic applications that require processing multi-million…

Machine Learning · Computer Science 2026-05-19 Ceyu Xu , Jiangnan Yu , Yongji Wu , Yuan Xie

Recent progress in large language models (LLMs) has gained interest in speech-text multimodal foundation models, achieving strong performance on instruction-tuned speech translation (ST). However, expanding language pairs is costly due to…

Computation and Language · Computer Science 2025-07-30 Yao-Fei Cheng , Hayato Futami , Yosuke Kashiwagi , Emiru Tsunoo , Wen Shen Teo , Siddhant Arora , Shinji Watanabe

Accurate molecular property prediction (MPP) is a critical step in modern drug development. However, the scarcity of experimental validation data poses a significant challenge to AI-driven research paradigms. Under few-shot learning…

Machine Learning · Computer Science 2025-05-20 Yifan Dai , Xuanbai Ren , Tengfei Ma , Qipeng Yan , Yiping Liu , Yuansheng Liu , Xiangxiang Zeng

Simultaneous Machine Translation (SiMT) requires high-quality translations under strict real-time constraints, which traditional encoder-decoder policies with only READ/WRITE actions cannot fully address. We extend the action space of SiMT…

Computation and Language · Computer Science 2025-09-29 Qianen Zhang , Satoshi Nakamura

We present ESPnet-ST, which is designed for the quick development of speech-to-speech translation systems in a single framework. ESPnet-ST is a new project inside end-to-end speech processing toolkit, ESPnet, which integrates or newly…

Computation and Language · Computer Science 2020-10-01 Hirofumi Inaguma , Shun Kiyono , Kevin Duh , Shigeki Karita , Nelson Enrique Yalta Soplin , Tomoki Hayashi , Shinji Watanabe

Pre-trained Language Models (PLMs) have been widely used in various natural language processing (NLP) tasks, owing to their powerful text representations trained on large-scale corpora. In this paper, we propose a new PLM called PERT for…

Computation and Language · Computer Science 2022-03-15 Yiming Cui , Ziqing Yang , Ting Liu

Compounded words are a challenge for NLP applications such as machine translation (MT). We introduce methods to learn splitting rules from monolingual and parallel corpora. We evaluate them against a gold standard and measure their impact…

Computation and Language · Computer Science 2007-05-23 Philipp Koehn , Kevin Knight

Semantic Textual Similarity (STS) is the basis of many applications in Natural Language Processing (NLP). Our system combines convolution and recurrent neural networks to measure the semantic similarity of sentences. It uses a convolution…

Computation and Language · Computer Science 2018-10-26 Elvys Linhares Pontes , Stéphane Huet , Andréa Carneiro Linhares , Juan-Manuel Torres-Moreno

Recent advancements in end-to-end speech synthesis have made it possible to generate highly natural speech. However, training these models typically requires a large amount of high-fidelity speech data, and for unseen texts, the prosody of…

Computation and Language · Computer Science 2021-11-16 Zhu Li , Yuqing Zhang , Mengxi Nie , Ming Yan , Mengnan He , Ruixiong Zhang , Caixia Gong

Mechanisms for continued self-improvement of language models without external supervision remain an open challenge. We propose Peer-Predictive Self-Training (PST), a label-free fine-tuning framework in which multiple language models improve…

Computation and Language · Computer Science 2026-04-28 Shi Feng , Hanlin Zhang , Fan Nie , Sham Kakade , Yiling Chen

Retrosynthesis prediction is fundamental to drug discovery and chemical synthesis, requiring the identification of reactants that can produce a target molecule. Current template-free methods struggle to capture the structural invariance…

Machine Learning · Computer Science 2025-10-21 Jiaxi Zhuang , Yu Zhang , Aimin Zhou , Ying Qian

Spectral algorithms leverage spectral regularization techniques to analyze and process data, providing a flexible framework for addressing supervised learning problems. To deepen our understanding of their performance in real-world…

Machine Learning · Statistics 2025-07-23 Jun Fan , Zheng-Chu Guo , Lei Shi

We cast retrosynthesis as a machine translation problem by introducing a special Tensor2Tensor, an entire attention-based and fully data-driven model. Given a data set comprising about 50,000 diverse reactions extracted from USPTO patents,…

Chemical Physics · Physics 2019-08-05 Hongliang Duan , Ling Wang , Chengyun Zhang , Jianjun Li

Can large language models predict physical and mechanical polymer properties simply by reading unstructured scientific prose? Polymer performance is rarely determined by chemical structure alone; identical nominal polymers can exhibit…

Machine Learning · Computer Science 2026-05-12 Yuchu Liu , Rui Zhu , Jingwei Xiong , Haixu Tang

Simultaneous speech translation (SST) outputs translations in parallel with streaming speech input, balancing translation quality and latency. While large language models (LLMs) have been extended to handle the speech modality, streaming…

Computation and Language · Computer Science 2025-04-23 Keqi Deng , Wenxi Chen , Xie Chen , Philip C. Woodland