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Graph Neural Networks (GNNs) have achieved great success but are often considered to be challenged by varying levels of homophily in graphs. Recent \textit{empirical} studies have surprisingly shown that homophilic GNNs can perform well…

Machine Learning · Computer Science 2025-10-27 Ming Gu , Zhuonan Zheng , Sheng Zhou , Meihan Liu , Jiawei Chen , Tanyu Qiao , Liangcheng Li , Jiajun Bu

With the increasing prevalence of graph-structured data, multi-view graph clustering has been widely used in various downstream applications. Existing approaches primarily rely on a unified message passing mechanism, which significantly…

Artificial Intelligence · Computer Science 2024-10-07 Jianpeng Chen , Yawen Ling , Yazhou Ren , Zichen Wen , Tianyi Wu , Shufei Zhang , Lifang He

Self-supervised learning has shown its promising capability in graph representation learning in recent work. Most existing pre-training strategies usually choose the popular Graph neural networks (GNNs), which can be seen as a special form…

Machine Learning · Computer Science 2023-06-16 Yilin Ding , Zhen Liu , Hao Hao

Graph convolution networks (GCNs) have been enormously successful in learning representations over several graph-based machine learning tasks. Specific to learning rich node representations, most of the methods have solely relied on the…

Machine Learning · Computer Science 2022-11-03 Ashish Tiwari , Sresth Tosniwal , Shanmuganathan Raman

Graph Neural Networks (GNNs) struggle to balance heterophily and homophily in representation learning, a challenge further amplified in self-supervised settings. We propose H$^3$GNNs, an end-to-end self-supervised learning framework that…

Machine Learning · Computer Science 2025-04-17 Rui Xue , Tianfu Wu

Hyperspectral image (HSI) clustering has been a fundamental but challenging task with zero training labels. Currently, some deep graph clustering methods have been successfully explored for HSI due to their outstanding performance in…

Computer Vision and Pattern Recognition · Computer Science 2025-01-08 Yao Ding , Weijie Kang , Aitao Yang , Zhili Zhang , Junyang Zhao , Jie Feng , Danfeng Hong , Qinhe Zheng

Homophily, as a measure, has been critical to increasing our understanding of graph neural networks (GNNs). However, to date this measure has only been analyzed in the context of static graphs. In our work, we explore homophily in dynamic…

Machine Learning · Computer Science 2025-04-30 Michael Ito , Danai Koutra , Jenna Wiens

Heterophily has been considered as an issue that hurts the performance of Graph Neural Networks (GNNs). To address this issue, some existing work uses a graph-level weighted fusion of the information of multi-hop neighbors to include more…

Machine Learning · Computer Science 2023-06-21 Yuhan Chen , Yihong Luo , Jing Tang , Liang Yang , Siya Qiu , Chuan Wang , Xiaochun Cao

Graph Neural Networks (GNNs) require a large number of labeled graph samples to obtain good performance on the graph classification task. The performance of GNNs degrades significantly as the number of labeled graph samples decreases. To…

Machine Learning · Computer Science 2023-09-20 Abdullah Alchihabi , Yuhong Guo

Graph Neural Networks (GNNs) have proven to be powerful in many graph-based applications. However, they fail to generalize well under heterophilic setups, where neighbor nodes have different labels. To address this challenge, we employ a…

Machine Learning · Computer Science 2023-04-13 Yoonhyuk Choi , Jiho Choi , Taewook Ko , Chong-Kwon Kim

Community search aims to identify a refined set of nodes that are most relevant to a given query, supporting tasks ranging from fraud detection to recommendation. Unlike homophilic graphs, many real-world networks are heterophilic, where…

Social and Information Networks · Computer Science 2026-02-23 Qing Sima , Xiaoyang Wang , Wenjie Zhang

Graph neural networks (GNNs) have shown remarkable performance on homophilic graph data while being far less impressive when handling non-homophilic graph data due to the inherent low-pass filtering property of GNNs. In general, since…

Machine Learning · Computer Science 2023-10-27 Shuai Zheng , Zhenfeng Zhu , Zhizhe Liu , Youru Li , Yao Zhao

Employing graph neural networks (GNNs) for graph clustering has shown promising results in deep graph clustering. However, existing methods disregard the reciprocal relationship between representation learning and structure augmentation:…

Machine Learning · Computer Science 2026-05-19 Shifei Ding , Benyu Wu , Xiao Xu , Ling Ding , Xindong Wu

The Graph Neural Network (GNN) has been widely used for graph data representation. However, the existing researches only consider the ideal balanced dataset, and the imbalanced dataset is rarely considered. Traditional methods such as…

Machine Learning · Computer Science 2022-05-10 S. Shi , Kai Qiao , Shuai Yang , L. Wang , J. Chen , Bin Yan

Graph neural networks (GNNs) have been widely adopted in engineering applications such as social network analysis, chemical research and computer vision. However, their efficacy is severely compromised by the inherent homophily assumption,…

Machine Learning · Computer Science 2026-04-13 Yi Luo , Xu Sun , Guangchun Luo , Aiguo Chen

Many widely used datasets for graph machine learning tasks have generally been homophilous, where nodes with similar labels connect to each other. Recently, new Graph Neural Networks (GNNs) have been developed that move beyond the homophily…

Machine Learning · Computer Science 2021-10-28 Derek Lim , Felix Hohne , Xiuyu Li , Sijia Linda Huang , Vaishnavi Gupta , Omkar Bhalerao , Ser-Nam Lim

Recently, graph neural networks (GNNs) have shown prominent performance in semi-supervised node classification by leveraging knowledge from the graph database. However, most existing GNNs follow the homophily assumption, where connected…

Machine Learning · Computer Science 2024-03-12 Henan Sun , Xunkai Li , Zhengyu Wu , Daohan Su , Rong-Hua Li , Guoren Wang

Graph heterophily poses a formidable challenge to the performance of Message-passing Graph Neural Networks (MP-GNNs). The familiar low-pass filters like Graph Convolutional Networks (GCNs) face performance degradation, which can be…

Machine Learning · Computer Science 2025-09-17 Kushal Bose , Swagatam Das

Graph clustering, an important unsupervised problem, has been shown to be more resistant to advances in Graph Neural Networks (GNNs). In addition, almost all clustering methods focus on homophilic graphs and ignore heterophily. This…

Machine Learning · Computer Science 2026-03-11 Xuanting Xie , Erlin Pan , Zhao Kang , Wenyu Chen , Bingheng Li

Recent work has shown that a simple, fast method called Simple Graph Convolution (SGC) (Wu et al., 2019), which eschews deep learning, is competitive with deep methods like graph convolutional networks (GCNs) (Kipf & Welling, 2017) in…

Machine Learning · Computer Science 2022-06-07 Sudhanshu Chanpuriya , Cameron Musco