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Attributed graphs, typically characterized by irregular topologies and a mix of numerical and categorical attributes, are ubiquitous in diverse domains such as social networks, bioinformatics, and cheminformatics. While graph kernels…

Machine Learning · Computer Science 2025-11-17 Hong Huang , Chengyu Yao , Haiming Chen , Hang Gao

This paper provides a new similarity detection algorithm. Given an input set of multi-dimensional data points, where each data point is assumed to be multi-dimensional, and an additional reference data point for similarity finding, the…

Artificial Intelligence · Computer Science 2017-07-12 Yariv Aizenbud , Amir Averbuch , Gil Shabat , Guy Ziv

Graph similarity computation aims to predict a similarity score between one pair of graphs to facilitate downstream applications, such as finding the most similar chemical compounds similar to a query compound or Fewshot 3D Action…

Machine Learning · Computer Science 2021-01-06 Haoyan Xu , Ziheng Duan , Jie Feng , Runjian Chen , Qianru Zhang , Zhongbin Xu , Yueyang Wang

The availability of graph data with node attributes that can be either discrete or real-valued is constantly increasing. While existing kernel methods are effective techniques for dealing with graphs having discrete node labels, their…

Machine Learning · Computer Science 2024-10-30 Giovanni Da San Martino , Nicolò Navarin , Alessandro Sperduti

Unified graph representation learning aims to generate node embeddings, which can be applied to multiple downstream applications of graph analytics. However, existing studies based on graph neural networks and language models either suffer…

Computation and Language · Computer Science 2025-08-05 Wenbo Shang , Xuliang Zhu , Xin Huang

More and more large data collections are gathered worldwide in various IT systems. Many of them possess the networked nature and need to be processed and analysed as graph structures. Due to their size they require very often usage of…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-06-04 Tomasz Kajdanowicz , Przemyslaw Kazienko , Wojciech Indyk

The success of kernel methods has initiated the design of novel positive semidefinite functions, in particular for structured data. A leading design paradigm for this is the convolution kernel, which decomposes structured objects into their…

Machine Learning · Computer Science 2017-02-01 Nils M. Kriege , Pierre-Louis Giscard , Richard C. Wilson

Graph Neural Networks (GNNs) have emerged as a dominant approach in graph representation learning, yet they often struggle to capture consistent similarity relationships among graphs. While graph kernel methods such as the Weisfeiler-Lehman…

Machine Learning · Computer Science 2024-12-12 Xuyuan Liu , Yinghao Cai , Qihui Yang , Yujun Yan

We give the first parallel algorithm with optimal $\tilde{O}(m)$ work for the classical problem of computing Single-Source Shortest Paths in general graphs with negative-weight edges. In graphs without negative edges, Dijkstra's algorithm…

Data Structures and Algorithms · Computer Science 2024-10-29 Nick Fischer , Bernhard Haeupler , Rustam Latypov , Antti Roeyskoe , Aurelio L. Sulser

One of the major challenges in applications related to social networks, computational biology, collaboration networks etc., is to efficiently search for similar patterns in their underlying graphs. These graphs are typically noisy and…

Social and Information Networks · Computer Science 2015-12-17 Kanigalpula Samanvi , Naveen Sivadasan

This paper proposes an affinity fusion graph framework to effectively connect different graphs with highly discriminating power and nonlinearity for natural image segmentation. The proposed framework combines adjacency-graphs and kernel…

Computer Vision and Pattern Recognition · Computer Science 2021-01-18 Yang Zhang , Moyun Liu , Jingwu He , Fei Pan , Yanwen Guo

In the decremental $(1+\epsilon)$-approximate Single-Source Shortest Path (SSSP) problem, we are given a graph $G=(V,E)$ with $n = |V|, m = |E|$, undergoing edge deletions, and a distinguished source $s \in V$, and we are asked to process…

Data Structures and Algorithms · Computer Science 2020-01-30 Maximilian Probst Gutenberg , Christian Wulff-Nilsen

Formulations of graph algorithms using sparse linear algebra have yielded highly scalable distributed algorithms for problems such as connectivity and shortest path computation. We develop the first formulation of the Awerbuch-Shiloach…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-12-16 Tim Baer , Raghavendra Kanakagiri , Edgar Solomonik

Graph-structured data arise in wide applications, such as computer vision, bioinformatics, and social networks. Quantifying similarities among graphs is a fundamental problem. In this paper, we develop a framework for computing graph…

Machine Learning · Statistics 2018-09-11 Zhen Zhang , Mianzhi Wang , Yijian Xiang , Yan Huang , Arye Nehorai

Node embeddings map graph vertices into low-dimensional Euclidean spaces while preserving structural information. They are central to tasks such as node classification, link prediction, and signal reconstruction. A key goal is to design…

Machine Learning · Computer Science 2026-02-18 Valentin de Bassompierre , Jean-Charles Delvenne , Laurent Jacques

Distance measures between graphs are important primitives for a variety of learning tasks. In this work, we describe an unsupervised, optimal transport based approach to define a distance between graphs. Our idea is to derive…

Computational Engineering, Finance, and Science · Computer Science 2024-04-11 Michael Scholkemper , Damin Kühn , Gerion Nabbefeld , Simon Musall , Björn Kampa , Michael T. Schaub

Graph-structured data arise in many scenarios. A fundamental problem is to quantify the similarities of graphs for tasks such as classification. R-convolution graph kernels are positive-semidefinite functions that decompose graphs into…

Machine Learning · Computer Science 2022-01-25 Wei Ye , Omid Askarisichani , Alex Jones , Ambuj Singh

This paper presents parallel, distributed and quantum algorithms for single-source shortest paths when edges can have negative weights (negative-weight SSSP). We show a framework that reduces negative-weight SSSP in all these setting to…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-20 Vikrant Ashvinkumar , Aaron Bernstein , Nairen Cao , Christoph Grunau , Bernhard Haeupler , Yonggang Jiang , Danupon Nanongkai , Hsin Hao Su

We present a unified framework to study graph kernels, special cases of which include the random walk graph kernel \citep{GaeFlaWro03,BorOngSchVisetal05}, marginalized graph kernel \citep{KasTsuIno03,KasTsuIno04,MahUedAkuPeretal04}, and…

Machine Learning · Computer Science 2010-11-30 S. V. N. Vishwanathan , Karsten M. Borgwardt , Imre Risi Kondor , Nicol N. Schraudolph

Movie graphs play an important role to bridge heterogenous modalities of videos and texts in human-centric retrieval. In this work, we propose Graph Wasserstein Correlation Analysis (GWCA) to deal with the core issue therein, i.e, cross…

Machine Learning · Computer Science 2020-08-07 Xueya Zhang , Tong Zhang , Xiaobin Hong , Zhen Cui , Jian Yang