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Graph neural networks (GNNs) have demonstrated excellent performance in semi-supervised node classification tasks. Despite this, two primary challenges persist: heterogeneity and heterophily. Each of these two challenges can significantly…

Machine Learning · Computer Science 2025-04-14 Kangkang Lu , Yanhua Yu , Zhiyong Huang , Yunshan Ma , Xiao Wang , Meiyu Liang , Yuling Wang , Yimeng Ren , Tat-Seng Chua

We introduce and study a novel problem of computing a shortest path tree with a minimum number of non-terminals. It can be viewed as an (unweighted) Steiner Shortest Path Tree (SSPT) that spans a given set of terminal vertices by shortest…

Data Structures and Algorithms · Computer Science 2025-09-09 Omer Asher , Yefim Dinitz , Shlomi Dolev , Li-on Raviv , Baruch Schieber

We introduce persistence spheres, a novel functional representation of persistence diagrams. Unlike existing embeddings (such as persistence images, landscapes, or kernel methods), persistence spheres provide a bi-continuous mapping: they…

Machine Learning · Computer Science 2025-10-01 Matteo Pegoraro

Much recent work in bioinformatics has focused on the inference of various types of biological networks, representing gene regulation, metabolic processes, protein-protein interactions, etc. A common setting involves inferring network edges…

Quantitative Methods · Quantitative Biology 2007-05-23 Jean-Philippe Vert , Jian Qiu , William Stafford Noble

Graph edit distance / similarity is widely used in many tasks, such as graph similarity search, binary function analysis, and graph clustering. However, computing the exact graph edit distance (GED) or maximum common subgraph (MCS) between…

Databases · Computer Science 2020-07-01 Haibo Xiu , Xiao Yan , Xiaoqiang Wang , James Cheng , Lei Cao

Graph pattern mining methods can extract informative and useful patterns from large-scale graphs and capture underlying principles through the overwhelmed information. Contrast analysis serves as a keystone in various fields and has…

Social and Information Networks · Computer Science 2018-02-20 Jingbo Shang , Xiyao Shi , Meng Jiang , Liyuan Liu , Timothy Hanratty , Jiawei Han

Multiple kernel learning (MKL) method is generally believed to perform better than single kernel method. However, some empirical studies show that this is not always true: the combination of multiple kernels may even yield an even worse…

Machine Learning · Statistics 2018-06-21 Zhao Kang , Xiao Lu , Jinfeng Yi , Zenglin Xu

We present new deterministic algorithms for computing distributed weighted minimum weight cycle (MWC) in undirected and directed graphs and distributed weighted all nodes shortest cycle (ANSC) in directed graphs. Our algorithms for these…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-03 Udit Agarwal

Addressing a quest by Gupta et al. [ICALP'14], we provide a first, comprehensive study of finding a short s-t path in the multistage graph model, referred to as the Multistage s-t Path problem. Herein, given a sequence of graphs over the…

Computational Complexity · Computer Science 2020-07-02 Till Fluschnik , Rolf Niedermeier , Carsten Schubert , Philipp Zschoche

We propose Slim Graph: the first programming model and framework for practical lossy graph compression that facilitates high-performance approximate graph processing, storage, and analytics. Slim Graph enables the developer to express…

Data Structures and Algorithms · Computer Science 2021-08-04 Maciej Besta , Simon Weber , Lukas Gianinazzi , Robert Gerstenberger , Andrey Ivanov , Yishai Oltchik , Torsten Hoefler

We propose a new graph-theoretic benchmark in this paper. The benchmark is developed to address shortcomings of an existing widely-used graph benchmark. We thoroughly studied a large number of traditional and contemporary graph algorithms…

Performance · Computer Science 2010-05-06 Andy B. Yoo , Yang Liu , Sheila Vaidya , Stephen Poole

Feature pyramids have been proven powerful in image understanding tasks that require multi-scale features. State-of-the-art methods for multi-scale feature learning focus on performing feature interactions across space and scales using…

Computer Vision and Pattern Recognition · Computer Science 2022-01-12 Gangming Zhao , Weifeng Ge , Yizhou Yu

With the increase in the number of image data and the lack of corresponding labels, weakly supervised learning has drawn a lot of attention recently in computer vision tasks, especially in the fine-grained semantic segmentation problem. To…

Computer Vision and Pattern Recognition · Computer Science 2021-10-11 Ke Zhang , Sihong Chen , Qi Ju , Yong Jiang , Yucong Li , Xin He

In several machine learning tasks for graph structured data, the graphs under consideration may be composed of a varying number of nodes. Therefore, it is necessary to design pooling methods that aggregate the graph representations of…

Machine Learning · Computer Science 2022-05-20 Effrosyni Simou

A main challenge in mining network-based data is finding effective ways to represent or encode graph structures so that it can be efficiently exploited by machine learning algorithms. Several methods have focused in network representation…

Social and Information Networks · Computer Science 2019-03-18 Leonardo Gutiérrez-Gómez , Jean-Charles Delvenne

Graph Neural Networks (GNNs) show strong expressive power on graph data mining, by aggregating information from neighbors and using the integrated representation in the downstream tasks. The same aggregation methods and parameters for each…

Machine Learning · Computer Science 2022-03-22 Xiaojun Ma , Qin Chen , Yuanyi Ren , Guojie Song , Liang Wang

Topological data analysis offers a rich source of valuable information to study vision problems. Yet, so far we lack a theoretically sound connection to popular kernel-based learning techniques, such as kernel SVMs or kernel PCA. In this…

Machine Learning · Statistics 2014-12-24 Jan Reininghaus , Stefan Huber , Ulrich Bauer , Roland Kwitt

Graph Neural Networks (GNNs) have attracted increasing attention in recent years and have achieved excellent performance in semi-supervised node classification tasks. The success of most GNNs relies on one fundamental assumption, i.e., the…

Machine Learning · Computer Science 2024-12-03 Junchao Lin , Yuan Wan , Jingwen Xu , Xingchen Qi

Dense subgraph discovery methods are routinely used in a variety of applications including the identification of a team of skilled individuals for collaboration from a social network. However, when the network's node set is associated with…

Social and Information Networks · Computer Science 2023-06-06 Atsushi Miyauchi , Tianyi Chen , Konstantinos Sotiropoulos , Charalampos E. Tsourakakis

Can neural networks learn to compare graphs without feature engineering? In this paper, we show that it is possible to learn representations for graph similarity with neither domain knowledge nor supervision (i.e.\ feature engineering or…

Machine Learning · Computer Science 2019-04-23 Rami Al-Rfou , Dustin Zelle , Bryan Perozzi
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