Related papers: Ranking Binary Unlabelled Necklaces in Polynomial …
Rank-based linkage is a new tool for summarizing a collection $S$ of objects according to their relationships. These objects are not mapped to vectors, and ``similarity'' between objects need be neither numerical nor symmetrical. All an…
An algorithm counting the number of ones in a binary word is presented running in time $O(\log\log b)$ where $b$ is the number of ones. The operations available include bit-wise logical operations and multiplication.
The entities in directed networks arising from real-world interactions are often naturally organized under some hierarchical structure. Given a directed, weighted, graph with edges and node labels, we introduce ranking problem where the…
We present a complete classification of the deterministic distributed time complexity for a family of graph problems: binary labeling problems in trees. These are locally checkable problems that can be encoded with an alphabet of size two…
Time series classification (TSC) is the problem of learning labels from time dependent data. One class of algorithms is derived from a bag of words approach. A window is run along a series, the subseries is shortened and discretised to form…
In this paper, we study the combinatorial set of RNA secondary structures of length $n$ with $m$ base-pairs. For a compact representation, we encode an RNA secondary structure by the corresponding Motzkin word. For this combinatorial set,…
A correlation is a binary vector that encodes all possible positions of overlaps of two words, where an overlap for an ordered pair of words (u,v) occurs if a suffix of word u matches a prefix of word v. As multiple pairs can have the same…
We introduce Loop Ranking, a new ranking measure based on the detection of closed paths, which can be computed in an efficient way. We analyze it with respect to several ranking measures which have been proposed in the past, and are widely…
In this paper, we provide algorithms to rank, unrank, and randomly generate certain degree-restricted classes of Cayley trees. Specifically, we consider classes of trees that have a given degree sequence or a given multiset of degrees. If…
Ranking objects is a simple and natural procedure for organizing data. It is often performed by assigning a quality score to each object according to its relevance to the problem at hand. Ranking is widely used for object selection, when…
We study the problems of finding a shortest synchronizing word and its length for a given prefix code. This is done in two different settings: when the code is defined by an arbitrary decoder recognizing its star and when the code is…
We consider the problem of binary string reconstruction from the multiset of its substring compositions, i.e., referred to as the substring composition multiset, first introduced and studied by Acharya et al. We introduce a new algorithm…
Tanglegrams are a special class of graphs appearing in applications concerning cospeciation and coevolution in biology and computer science. They are formed by identifying the leaves of two rooted binary trees. We give an explicit formula…
The rankable and compressible sets have been studied for more than a quarter of a century, ever since Allender [1] and Goldberg and Sipser [6] introduced the formal study of polynomial-time ranking. Yet even after all that time, whether the…
Correlation clustering is a technique for aggregating data based on qualitative information about which pairs of objects are labeled 'similar' or 'dissimilar.' Because the optimization problem is NP-hard, much of the previous literature…
Real world deployments of word alignment are almost certain to cover both high and low resource languages. However, the state-of-the-art for this task recommends a different model class depending on the availability of gold alignment…
An ordered set-partition (or preferential arrangement) of n labeled elements represents a single ``hierarchy''; these are enumerated by the ordered Bell numbers. In this note we determine the number of ``hierarchical orderings'' or…
Given an undirected graph representing similarities between a set of items and an additive measure evaluating the items, we treat the position of a special subset of items in an ordinal ranking through a collection of combinatorial…
An alphabetic binary tree formulation applies to problems in which an outcome needs to be determined via alphabetically ordered search prior to the termination of some window of opportunity. Rather than finding a decision tree minimizing…
A finite ranked poset is called a symmetric chain order if it can be written as a disjoint union of rank-symmetric, saturated chains. If $P$ is any symmetric chain order, we prove that $P^n/\mathbb{Z}_n$ is also a symmetric chain order,…