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Continuous cellular automata are rocketing in popularity, yet developing a theoretical understanding of their behaviour remains a challenge. In the case of Lenia, a few fundamental open problems include determining what exactly constitutes…

Cellular Automata and Lattice Gases · Physics 2026-01-06 Barbora Hudcová , František Dušek , Marco Tuccio , Clément Hongler

Self-organization of complex morphological patterns from local interactions is a fascinating phenomenon in many natural and artificial systems. In the artificial world, typical examples of such morphogenetic systems are cellular automata.…

Machine Learning · Computer Science 2021-09-06 Mayalen Etcheverry , Clement Moulin-Frier , Pierre-Yves Oudeyer

We use Topological Data Analysis tools for studying the inner organization of cells in segmented images of epithelial tissues. More specifically, for each segmented image, we compute different persistence barcodes, which codify lifetime of…

Computer Vision and Pattern Recognition · Computer Science 2022-04-11 N. Atienza , M. J. Jimenez , M. Soriano-Trigueros

In the context of large-scale networks, the consideration of faults is an evident necessity. This document is focussing on the self-stabilizing approach which aims at conceiving algorithms "repairing themselves" in case of transient faults,…

Distributed, Parallel, and Cluster Computing · Computer Science 2013-10-10 Lélia Blin

We investigate the self-organising behaviour of Digital Ecosystems, because a primary motivation for our research is to exploit the self-organising properties of biological ecosystems. We extended a definition for the complexity, grounded…

Neural and Evolutionary Computing · Computer Science 2012-01-25 Gerard Briscoe , Philippe De Wilde

Multicellular organisms comprise a diverse collection of stable tissues built from different cell types. It remains unclear how large numbers of interacting cells can precisely coordinate their gene expression during tissue…

Biological Physics · Physics 2022-10-31 Matthew Smart , Anton Zilman

Self-stabilization is a versatile technique to withstand any transient fault in a distributed system. Mobile robots (or agents) are one of the emerging trends in distributed computing as they mimic autonomous biologic entities. The…

Data Structures and Algorithms · Computer Science 2009-09-29 Lélia Blin , Maria Gradinariu Potop-Butucaru , Sébastien Tixeuil

Self-organisation lies at the core of fundamental but still unresolved scientific questions, and holds the promise of de-centralised paradigms crucial for future technological developments. While self-organising processes have been…

Adaptation and Self-Organizing Systems · Physics 2019-04-16 Fernando Rosas , Pedro A. M. Mediano , Martin Ugarte , Henrik J. Jensen

One of the key characteristics of multicellular organisms is the ability to establish and maintain shapes, or morphologies, under a variety of physical and chemical perturbations. A quantitative description of the underlying morphological…

Tissues and Organs · Quantitative Biology 2019-05-22 Anne-Mieke Reijne , Gunnar Pruessner , Giovanni Sena

Disordered systems subject to a fluctuating environment can self-organize into a complex history-dependent response, retaining a memory of the driving. In sheared amorphous solids, self-organization is established by the emergence of a…

Soft Condensed Matter · Physics 2026-01-08 Muhittin Mungan , Eric Clement , Damien Vandembroucq , Srikanth Sastry

This is the third in a series math.AG/0312190, math.AG/0503029, math.AG/0410268 on configurations in an abelian category A. Given a finite partially ordered set (I,<), an (I,<)-configuration (\sigma,\iota,\pi) is a finite collection of…

Algebraic Geometry · Mathematics 2007-05-23 Dominic Joyce

We do not attempt to provide yet another definition of selforganization, but explore the conditions under which we can model a system as self-organizing. These involve the dynamics of entropy, and the purpose, aspects, and description level…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Carlos Gershenson , Francis Heylighen

We report experimental extensions of Lenia, a continuous cellular automata family capable of producing lifelike self-organizing autonomous patterns. The rule of Lenia was generalized into higher dimensions, multiple kernels, and multiple…

Cellular Automata and Lattice Gases · Physics 2021-07-12 Bert Wang-Chak Chan

Many living and non-living complex systems can be modeled and understood as collective systems made of heterogeneous components that self-organize and generate nontrivial morphological structures and behaviors. This chapter presents a brief…

Adaptation and Self-Organizing Systems · Physics 2018-01-09 Hiroki Sayama

We analyze functionals that characterize the distribution of eigenstates in Fock space through a tool derived from algebraic topology: persistent homology. Drawing on recent generalizations of the localization landscape applicable to…

Disordered Systems and Neural Networks · Physics 2023-02-21 Gregory A. Hamilton , Bryan K. Clark

The spatial structure, fluctuations as well as all state probabilities of self-organized (steady) states of cellular automata can be found (almost) exactly and {\em explicitly} from their Markovian dynamics. The method is shown on an…

Statistical Mechanics · Physics 2016-08-31 M. V. Medvedev , P. H. Diamond

Multicellular rosettes are observed in different situations such as morphogenesis, wound healing, and cancer progression. While some molecular insights have been gained to explain the presence of these assemblies of five or more cells…

Living systems are thermodynamically open but closed in their organization. In other words, even though their material components turn over constantly, a material-independent property persists, which we call organization. Moreover,…

Quantitative Methods · Quantitative Biology 2025-03-07 Pedro Márquez-Zacarías , Andrés Ortiz-Muñoz , Emma P. Bingham

Different cell types aggregate and sort into hierarchical architectures during the formation of animal tissues. The resulting spatial organization depends (in part) on the strength of adhesion of one cell type to itself relative to other…

Quantitative Methods · Quantitative Biology 2023-08-02 Dhananjay Bhaskar , William Y. Zhang , Alexandria Volkening , Björn Sandstede , Ian Y. Wong

Complex evolving systems such as the biosphere, ecosystems and societies exhibit sudden collapses, for reasons that are only partially understood. Here we study this phenomenon using a mathematical model of a system that evolves under…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Ravi Mehrotra , Vikram Soni , Sanjay Jain
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