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We present a comparison between various algorithms of inference of covariance and precision matrices in small datasets of real vectors, of the typical length and dimension of human brain activity time series retrieved by functional Magnetic…

Statistical Mechanics · Physics 2023-02-07 Miguel Ibáñez-Berganza , Carlo Lucibello , Francesca Santucci , Tommaso Gili , Andrea Gabrielli

Large efforts are currently under way to systematically map functional connectivity between all pairs of millimeter-scale brain regions using big volumes of neuroimaging data. Functional magnetic resonance imaging (fMRI) can produce these…

Neurons and Cognition · Quantitative Biology 2014-09-24 Enzo Tagliazucchi , Helmut Laufs , Dante R. Chialvo

The human brain is a complex, dynamic network, which is commonly studied using functional magnetic resonance imaging (fMRI) and modeled as network of Regions of interest (ROIs) for understanding various brain functions. Recent studies…

Quantitative Methods · Quantitative Biology 2024-06-26 Yifan Yang , Yutong Mao , Xufu Liu , Xiao Liu

Fetal magnetic resonance imaging (MRI) is challenged by uncontrollable, large, and irregular fetal movements. It is, therefore, performed through visual monitoring of fetal motion and repeated acquisitions to ensure diagnostic-quality…

Image and Video Processing · Electrical Eng. & Systems 2020-06-09 Ayush Singh , Seyed Sadegh Mohseni Salehi , Ali Gholipour

The human brain is liable to undergo substantial alterations, anatomically and functionally with aging. Cognitive brain aging can either be healthy or degenerative in nature. Such degeneration of cognitive ability can lead to disorders such…

Signal Processing · Electrical Eng. & Systems 2022-06-17 Prerna Singh , Tapan Kumar Gandhi , Lalan Kumar

Recent studies in neuroscience highlight the significant potential of brain connectivity networks, which are commonly constructed from functional magnetic resonance imaging (fMRI) data for brain disorder diagnosis. Traditional brain…

Integrating functional magnetic resonance imaging (fMRI) connectivity data with phenotypic textual descriptors (e.g., disease label, demographic data) holds significant potential to advance our understanding of neurological conditions.…

Machine Learning · Computer Science 2025-03-31 Yanting Yang , Xiaoxiao Li

We present a pipeline for unbiased and robust multimodal registration of neuroimaging modalities with minimal pre-processing. While typical multimodal studies need to use multiple independent processing pipelines, with diverse options and…

Computer Vision and Pattern Recognition · Computer Science 2024-01-26 Adria Casamitjana , Juan Eugenio Iglesias , Raul Tudela , Aida Ninerola-Baizan , Roser Sala-Llonch

Resting-state functional magnetic resonance imaging (rs-fMRI), which measures the spontaneous fluctuations in the blood oxygen level-dependent (BOLD) signal, is increasingly utilized for the investigation of the brain's physiological and…

Localizing neuronal activity in the brain, both in time and in space, is a central challenge to advance the understanding of brain function. Because of the inability of any single neuroimaging techniques to cover all aspects at once, there…

Neurons and Cognition · Quantitative Biology 2013-07-09 Yaroslav O. Halchenko , Michael Hanke , James V. Haxby , Stephen Jose Hanson , Christoph S. Herrmann

Predicting behavioral variables from neuroimaging modalities such as magnetic resonance imaging (MRI) has the potential to allow the development of neuroimaging biomarkers of mental and neurological disorders. A crucial processing step to…

Neurons and Cognition · Quantitative Biology 2025-07-29 Mikkel Schöttner Sieler , Thomas A. W. Bolton , Jagruti Patel , Patric Hagmann

Neurons, with their elongated, tree-like dendritic and axonal structures, enable efficient signal integration and long-range communication across brain regions. By reconstructing individual neurons' morphology, we can gain valuable insights…

Computer Vision and Pattern Recognition · Computer Science 2024-11-08 Rubin Zhao , Yang Liu , Shiqi Zhang , Zijian Yi , Yanyang Xiao , Fang Xu , Yi Yang , Pencheng Zhou

Head MRI pre-processing involves converting raw images to an intensity-normalized, skull-stripped brain in a standard coordinate space. In this paper, we propose an end-to-end weakly supervised learning approach, called Neural…

Image and Video Processing · Electrical Eng. & Systems 2023-03-23 Xinzi He , Alan Wang , Mert R. Sabuncu

Neural network (NN) based approaches for super-resolution MRI typically require high-SNR high-resolution reference data acquired in many subjects, which is time consuming and a barrier to feasible and accessible implementation. We propose…

Image and Video Processing · Electrical Eng. & Systems 2022-11-11 Jiaxin Xiao , Zihan Li , Berkin Bilgic , Jonathan R. Polimeni , Susie Huang , Qiyuan Tian

We present a cross-modality generation framework that learns to generate translated modalities from given modalities in MR images without real acquisition. Our proposed method performs NeuroImage-to-NeuroImage translation (abbreviated as…

Computer Vision and Pattern Recognition · Computer Science 2018-09-12 Qianye Yang , Nannan Li , Zixu Zhao , Xingyu Fan , Eric I-Chao Chang , Yan Xu

The approximation and convergence properties of implicit neural representations (INRs) are known to be highly sensitive to parameter initialization strategies. While several data-driven initialization methods demonstrate significant…

Computer Vision and Pattern Recognition · Computer Science 2026-04-01 Kushal Vyas , Alper Kayabasi , Daniel Kim , Vishwanath Saragadam , Ashok Veeraraghavan , Guha Balakrishnan

Joint low-rank and sparse unrolling networks have shown superior performance in dynamic MRI reconstruction. However, existing works mainly utilized matrix low-rank priors, neglecting the tensor characteristics of dynamic MRI images, and…

Computer Vision and Pattern Recognition · Computer Science 2025-02-18 Yinghao Zhang , Haiyan Gui , Ningdi Yang , Yue Hu

Currently, connectomes (e.g., functional or structural brain graphs) can be estimated in humans at $\approx 1~mm^3$ scale using a combination of diffusion weighted magnetic resonance imaging, functional magnetic resonance imaging and…

Dynamic functional connectivity analysis provides valuable information for understanding brain functional activity underlying different cognitive processes. Besides sliding window based approaches, a variety of methods have been developed…

Computer Vision and Pattern Recognition · Computer Science 2018-09-18 Hongming Li , Yong Fan

Functional magnetic resonance imaging (fMRI) is one of the most common imaging modalities to investigate brain functions. Recent studies in neuroscience stress the great potential of functional brain networks constructed from fMRI data for…

Machine Learning · Computer Science 2022-05-31 Xuan Kan , Hejie Cui , Joshua Lukemire , Ying Guo , Carl Yang
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