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Biochemical computing attempts to process information with biomolecules and biological objects. In this work we review our results on analysis and optimization of single biochemical logic gates based on enzymatic reactions, and a network of…

Molecular Networks · Quantitative Biology 2010-09-22 Mary A. Arugula , Jan Halamek , Evgeny Katz , Dmitriy Melnikov , Marcos Pita , Vladimir Privman , Guinevere Strack

Short-term presynaptic plasticity designates variations of the amplitude of synaptic information transfer whereby the amount of neurotransmitter released upon presynaptic stimulation changes over seconds as a function of the neuronal firing…

Neurons and Cognition · Quantitative Biology 2011-12-06 Maurizio De Pittà , Vladislav Volman , Hugues Berry , Eshel Ben-Jacob

Brain activities are featured by spatially distributed neural clusters of coherent firings and a spontaneous switching of the clusters between the synchrony and asynchrony states. Evidences from {\it in vivo} experiments suggest that…

Neurons and Cognition · Quantitative Biology 2023-02-02 Ya Wang , Liang Wang , Huawei Fan , Jun Ma , Hui Cao , Xingang Wang

Analog neuromorphic computing systems emulate the parallelism and connectivity of the human brain, promising greater expressivity and energy efficiency compared to digital systems. Though many devices have emerged as candidates for…

Mesoscale and Nanoscale Physics · Physics 2023-10-05 Samuel Liu , Deji Akinwande , Dmitry Kireev , Jean Anne C. Incorvia

We report a study of a system which involves an enzymatic cascade realizing an AND logic gate, with an added photochemical processing of the output allowing to make the gate's response sigmoid in both inputs. New functional forms are…

Soft Condensed Matter · Physics 2013-11-05 Vladimir Privman , Brian E. Fratto , Oleksandr Zavalov , Jan Halamek , Evgeny Katz

While there is still a lot to learn about astrocytes and their neuromodulatory role in the spatial and temporal integration of neuronal activity, their introduction to neuromorphic hardware is timely, facilitating their computational…

Neural and Evolutionary Computing · Computer Science 2019-09-20 Guangzhi Tang , Ioannis E. Polykretis , Vladimir A. Ivanov , Arpit Shah , Konstantinos P. Michmizos

The participation of astrocytes in brain computation was formally hypothesized in 1992, coinciding with the discovery that these glial cells display a complex form of Ca2+ excitability. This fostered conceptual advances centered on the…

Neurons and Cognition · Quantitative Biology 2023-10-23 Ciaran Murphy-Royal , ShiNung Ching , Thomas Papouin

The investigation of the neuronal environment allows us to better understand the activity of a cerebral region as a whole. The recent experimental evidences of the presence of transporters for glutamate and GABA in both neuronal and…

Neurons and Cognition · Quantitative Biology 2015-10-07 Aurélie Garnier , Alexandre Vidal , Habib Benali

Computing based on biochemical processes is a newest rapidly developing field of unconventional information and signal processing. In this paper we present results of our research in the field of biochemical computing and summarize the…

The reliability of logical operations is indispensable for the reliable operation of computational systems. Since the down-sizing of micro-fabrication generates non-negligible noise in these systems, a new approach for designing…

Other Computer Science · Computer Science 2020-04-22 Tetsuya J. Kobayashi

Neuromorphic Computing (NC), which emulates neural activities of the human brain, is considered for low-power implementation of artificial intelligence. Towards realizing NC, fabrication, and investigations of hardware elements such as…

Materials Science · Physics 2021-09-21 P. Monalisha , P. S. Anil Kumar , X. Renshaw Wang , S. N. Piramanayagam

Memcomputing logic gates generalize the traditional Boolean logic gates for operation in the reverse direction. According to the literature, this functionality enables the efficient solution of computationally-intensive problems including…

Emerging Technologies · Computer Science 2024-02-02 Y. V. Pershin

Experimental and theoretical analyses of the lactate dehydrogenase and glutathione reductase based enzymatic AND logic gates in which the enzymes and their substrates serve as logic inputs are performed. These two systems are examples of…

Recent advances in biochemical computing, i.e., information processing with cascades of primarily enzymatic reactions realizing computing gates, such as AND, OR, etc., as well as progress in networking these gates and coupling of the…

Biological Physics · Physics 2010-10-12 Vladimir Privman , Evgeny Katz , Joseph Wang

We present a simple biophysical model for the coupling between synaptic transmission and the local calcium concentration on an enveloping astrocytic domain. This interaction enables the astrocyte to modulate the information flow from…

Neurons and Cognition · Quantitative Biology 2007-05-23 Vladislav Volman , Eshel Ben-Jacob , Herbert Levine

Preliminary attempts at incorporating the critical role of astrocytes - cells that constitute more than 50\% of human brain cells - in brain-inspired neuromorphic computing remain in infancy. This paper seeks to delve deeper into various…

Neural and Evolutionary Computing · Computer Science 2025-08-07 Md Zesun Ahmed Mia , Malyaban Bal , Abhronil Sengupta

Biochemical computing is an emerging field of unconventional computing that attempts to process information with biomolecules and biological objects using digital logic. In this work we survey filtering in general, in biochemical computing,…

Recent experimental breakthroughs have finally allowed to implement in-vitro reaction kinetics (the so called {\em enzyme based logic}) which code for two-inputs logic gates and mimic the stochastic AND (and NAND) as well as the stochastic…

Disordered Systems and Neural Networks · Physics 2016-02-02 Elena Agliari , Matteo Altavilla , Adriano Barra , Lorenzo Dello Schiavo , Evgeny Katz

Astrocytes, the most abundant type of glial cell, play a fundamental role in memory. Despite most hippocampal synapses being contacted by an astrocyte, there are no current theories that explain how neurons, synapses, and astrocytes might…

Neurons and Cognition · Quantitative Biology 2024-07-24 Leo Kozachkov , Jean-Jacques Slotine , Dmitry Krotov

Neuromorphic computing systems, where information is transmitted through action potentials in a bio-plausible fashion, is gaining increasing interest due to its promise of low-power event-driven computing. Application of neuromorphic…

Neural and Evolutionary Computing · Computer Science 2025-09-03 Zhuangyu Han , Abhronil Sengupta