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Graphs and networks are a key research tool for a variety of science fields, most notably chemistry, biology, engineering and social sciences. Modeling and generation of graphs with efficient sampling is a key challenge for graphs. In…

Machine Learning · Computer Science 2019-09-26 Ruud van Deursen , Guillaume Godin

The recent deep generative models for static graphs that are now being actively developed have achieved significant success in areas such as molecule design. However, many real-world problems involve temporal graphs whose topology and…

Machine Learning · Computer Science 2021-03-09 Liming Zhang , Liang Zhao , Shan Qin , Dieter Pfoser

To build a flexible and interpretable model for document analysis, we develop deep autoencoding topic model (DATM) that uses a hierarchy of gamma distributions to construct its multi-stochastic-layer generative network. In order to provide…

Machine Learning · Computer Science 2020-06-17 Hao Zhang , Bo Chen , Yulai Cong , Dandan Guo , Hongwei Liu , Mingyuan Zhou

We propose a new family of efficient and expressive deep generative models of graphs, called Graph Recurrent Attention Networks (GRANs). Our model generates graphs one block of nodes and associated edges at a time. The block size and…

Surrogate networks can constitute suitable replacements for real networks, in particular to study dynamical processes on networks, when only incomplete or limited datasets are available. As empirical datasets most often present complex…

Physics and Society · Physics 2025-04-17 Giulia Cencetti , Alain Barrat

Graph is a prevalent discrete data structure, whose generation has wide applications such as drug discovery and circuit design. Diffusion generative models, as an emerging research focus, have been applied to graph generation tasks.…

Machine Learning · Computer Science 2024-11-05 Zhe Xu , Ruizhong Qiu , Yuzhong Chen , Huiyuan Chen , Xiran Fan , Menghai Pan , Zhichen Zeng , Mahashweta Das , Hanghang Tong

Modeling of dynamic networks -- networks that evolve over time -- has manifold applications in many fields. In epidemiology in particular, there is a need for data-driven modeling of human sexual relationship networks for the purpose of…

Methodology · Statistics 2022-03-15 Pavel N. Krivitsky

Temporal networks allow representing connections between objects while incorporating the temporal dimension. While static network models can capture unchanging topological regularities, they often fail to model the effects associated with…

Machine Learning · Computer Science 2025-07-11 Mathilde Perez , Raphaël Romero , Bo Kang , Tijl De Bie , Jefrey Lijffijt , Charlotte Laclau

Graph representation learning is a fundamental problem for modeling relational data and benefits a number of downstream applications. Traditional Bayesian-based graph models and recent deep learning based GNN either suffer from…

Machine Learning · Computer Science 2024-03-27 Hanxuan Yang , Qingchao Kong , Wenji Mao

Neural network based data-driven market simulation unveils a new and flexible way of modelling financial time series without imposing assumptions on the underlying stochastic dynamics. Though in this sense generative market simulation is…

Statistical Finance · Quantitative Finance 2020-06-26 Hans Bühler , Blanka Horvath , Terry Lyons , Imanol Perez Arribas , Ben Wood

Real networks exhibit nontrivial topological features such as heavy-tailed degree distribution, high clustering, and small-worldness. Researchers have developed several generative models for synthesizing artificial networks that are…

Social and Information Networks · Computer Science 2014-02-04 Sadegh Motallebi , Sadegh Aliakbary , Jafar Habibi

Graphs are a highly expressive abstraction for modeling entities and their relations, such as molecular structures, social networks, and traffic networks. Deep Graph Networks (DGNs) have emerged as a family of deep learning models that can…

Machine Learning · Computer Science 2024-10-16 Alessio Gravina

We introduce the Contextual Graph Markov Model, an approach combining ideas from generative models and neural networks for the processing of graph data. It founds on a constructive methodology to build a deep architecture comprising layers…

Machine Learning · Computer Science 2019-11-26 Davide Bacciu , Federico Errica , Alessio Micheli

Accurate epidemic forecasting is a critical task in controlling disease transmission. Many deep learning-based models focus only on static or dynamic graphs when constructing spatial information, ignoring their relationship. Additionally,…

Machine Learning · Computer Science 2023-12-04 Junkai Mao , Yuexing Han , Gouhei Tanaka , Bing Wang

Graph Neural Networks (GNNs) are becoming central in the study of time series, coupled with existing algorithms as Temporal Convolutional Networks and Recurrent Neural Networks. In this paper, we see time series themselves as directed…

Machine Learning · Computer Science 2023-10-05 Angelica Simonetti , Ferdinando Zanchetta

Gene regulation is a dynamic process that underlies all aspects of human development, disease response, and other key biological processes. The reconstruction of temporal gene regulatory networks has conventionally relied on regression…

Quantitative Methods · Quantitative Biology 2024-10-04 Euxhen Hasanaj , Barnabás Póczos , Ziv Bar-Joseph

Graph generative models are highly important for sharing surrogate data and benchmarking purposes. Real-world complex systems often exhibit dynamic nature, where the interactions among nodes change over time in the form of a temporal…

Social and Information Networks · Computer Science 2023-06-21 Penghang Liu , A. Erdem Sarıyüce

We introduce a general framework for leveraging graph stream data for temporal prediction-based applications. Our proposed framework includes novel methods for learning an appropriate graph time-series representation, modeling and weighting…

Machine Learning · Computer Science 2020-09-22 Di Jin , Sungchul Kim , Ryan A. Rossi , Danai Koutra

Deep graph generative modeling has proven capable of learning the distribution of complex, multi-scale structures characterizing real-world graphs. However, one of the main limitations of existing methods is their large output space, which…

Machine Learning · Computer Science 2023-06-01 Nathaniel Diamant , Alex M. Tseng , Kangway V. Chuang , Tommaso Biancalani , Gabriele Scalia

A network provides powerful means of representing complex relationships between entities by abstracting entities as vertices, and relationships as edges connecting vertices in a graph. Beyond the presence or absence of relationships, a…

Social and Information Networks · Computer Science 2020-01-15 Isuru Udayangani Hewapathirana