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We present a minimal model for simulating dynamics of assorted lipid assemblies in a computationally efficient manner. Our model is particle-based and consists of coarse-grained beads put together on a modular platform to give generic…

Chemical Physics · Physics 2019-10-15 John M. A. Grime , Jesper J. Madsen

We consider the equilibrium of liquid droplets sitting on thin elastic sheets that are subject to a boundary tension and/or are clamped at their edge. We use scaling arguments, together with a detailed analysis based on the…

Soft Condensed Matter · Physics 2019-03-20 Benny Davidovitch , Dominic Vella

We present molecular dynamics (MD) results to discuss wetting kinetics in binary fluid mixtures ($A:B=50:50$) undergoing surface-directed spinodal decomposition (SDSD) on an amorphous wall. Our simulations show the formation of a wetting…

Soft Condensed Matter · Physics 2025-12-09 Syed Shuja Hasan Zaidi , Madhu Priya , Sanjay Puri , Prabhat K. Jaiswal

This study systematically investigates the dynamics of the bacterial transition from free-swimming to surface adhesion, a process characterized by both height $h$ and inclination angle $\Psi$. The surface entrapment process is divided into…

Soft Condensed Matter · Physics 2025-06-25 Baopi Liu , Bowen Jin , Ning An

Soluble alpha-amylases play an important role in the catabolism of polysaccharides. In this work, we show that the enzyme can interact with the lipid membrane and further alter its mechanical properties. Vesicle fluctuation spectroscopy is…

Molecular Dynamics simulations of a coarse-grained bead-spring model of flexible macromolecules tethered with one end to the surface of a cylindrical pore are presented. Chain length $N$ and grafting density $\sigma$ are varied over a wide…

Soft Condensed Matter · Physics 2007-05-23 Dimitar I. Dimitrov , Andrey Milchev , Kurt Binder , Dieter W. Heermann

We study the mechanics of a reversible decohesion (unzipping) of an elastic layer subjected to quasi-static end-point loading. At the micro level the system is simulated by an elastic chain of particles interacting with a rigid foundation…

Other Quantitative Biology · Quantitative Biology 2015-05-13 F. Maddalena , D. Percivale , G. Puglisi , L. Truskinovsky

We present an analytical study of oscillatory laminar shear flow over a compliant viscoelastic layer on a rigid base. This problem relates to oscillating blood flow in viscoelastic vessels. The deeper motivation for this study, however, is…

Fluid Dynamics · Physics 2017-05-15 H. O. G. Benschop , W. -P. Breugem

We study the yielding transition of a two dimensional amorphous system under shear by using a mesoscopic elasto-plastic model. The model combines a full (tensorial) description of the elastic interactions in the system, and the possibility…

Materials Science · Physics 2017-08-23 E. A. Jagla

A theoretical approach has been undertaken in order to model the thermodynamic equilibrium of a vesicle adhering to a flat substrate. The vesicle is treated in a canonical description with a fixed number of sites. A finite number of these…

Soft Condensed Matter · Physics 2009-11-11 Ana-Suncana Smith , Udo Seifert

Adhesion requires molecular contact, and natural adhesives employ mechanical gradients to achieve complete (conformal) contact to maximize adhesion. Intuitively, one expects that the higher the modulus of the top layer, the lower will be…

Soft Condensed Matter · Physics 2024-02-26 Shubhendu Kumar , Babu Gaire , Bo Persson , Ali Dhinojwala

The rheology of semidilute bacterial suspensions is studied with the tools of kinetic theory, considering binary interactions, going beyond the ideal gas approximation. Two models for the interactions are considered, which encompass both…

Soft Condensed Matter · Physics 2019-01-31 Marcelo Guzman , Rodrigo Soto

The viscosity of lipid bilayer membranes plays an important role in determining the diffusion constant of embedded proteins and the dynamics of membrane deformations, yet it has historically proven very difficult to measure. Here we…

Soft Condensed Matter · Physics 2013-08-30 Aurelia R. Honerkamp-Smith , Francis G. Woodhouse , Vasily Kantsler , Raymond E. Goldstein

We present a detailed comparison of the rheological behaviour of sheared sediment beds in a pressure-driven, straight channel configuration based on data that was generated by means of fully coupled, grain-resolved direct numerical…

Fluid Dynamics · Physics 2021-07-21 B. Vowinckel , E. Biegert , E. Meiburg , P. Aussillous , É. Guazzelli

Cells offer numerous inspiring examples where proteins and membranes combine to form complex structures that are key to intracellular compartmentalization, cargo transport, and specialization of cell morphology. Despite this wealth of…

We consider a fluid of hard spheres bearing one or two uniform circular adhesive patches, distributed so as not to overlap. Two spheres interact via a ``sticky'' Baxter potential if the line joining the centers of the two spheres intersects…

Statistical Mechanics · Physics 2009-11-13 Riccardo Fantoni , Domenico Gazzillo , Achille Giacometti , Mark A. Miller , Giorgio Pastore

A recently proposed schematic model for the non--linear rheology of dense colloidal dispersions is compared to flow curves measured in suspensions that consist of thermosensitive particles. The volume fraction of this purely repulsive model…

Soft Condensed Matter · Physics 2009-11-11 Matthias Fuchs , Matthias Ballauff

Recent experimental developments showed that the use of the radiation pressure, induced by a continuous laser wave, to control fluid-fluid interface deformations at the microscale, represents a very promising alternative to electric or…

Soft Condensed Matter · Physics 2010-07-26 Hamza Chraibi , Didier Lasseux , Régis Wunenburger , Eric Arquis , Jean-Pierre Delville

Bolaamphiphilesamphiphilic molecules with polar groups at each of the two ends of a hydrophobic tail with pH-sensitive spontaneous molecular curvaturesendow membranes of extremophiles with an exquisite balance between stability (or…

We use an elastic model to explore faceting of solid-wall vesicles with elastic heterogeneities. We show that faceting occurs in regions where the vesicle wall is softer, such as areas of reduced wall thicknesses or concentrated in…

Soft Condensed Matter · Physics 2012-05-30 Rastko Sknepnek , Monica Olvera de la Cruz
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