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The development of Electronic Health Records summarization systems has revolutionized patient data management. Previous research advanced this field by adapting Large Language Models for clinical tasks, using diverse datasets to generate…

Computation and Language · Computer Science 2024-10-15 Ruvarashe Madzime , Clement Nyirenda

Medical Question Answering~(medical QA) systems play an essential role in assisting healthcare workers in finding answers to their questions. However, it is not sufficient to merely provide answers by medical QA systems because users might…

Computation and Language · Computer Science 2023-10-03 Wei Sun , Mingxiao Li , Damien Sileo , Jesse Davis , Marie-Francine Moens

Electronic health record (EHR) question answering is often handled by LLM-based pipelines that are costly to deploy and do not explicitly leverage the hierarchical structure of clinical data. Motivated by evidence that medical ontologies…

Artificial Intelligence · Computer Science 2026-04-24 Yuyu Liu , Sarang Rajendra Patil , Mengjia Xu , Tengfei Ma

Recently, deep learning-based language models have significantly enhanced text-to-SQL tasks, with promising applications in retrieving patient records within the medical domain. One notable challenge in such applications is discerning…

Computation and Language · Computer Science 2024-04-26 Sangryul Kim , Donghee Han , Sehyun Kim

This study addresses the critical issue of reliability for AI-assisted medical diagnosis. We focus on the selection prediction approach that allows the diagnosis system to abstain from providing the decision if it is not confident in the…

Text-to-SQL parsing and end-to-end question answering (E2E TQA) are two main approaches for Table-based Question Answering task. Despite success on multiple benchmarks, they have yet to be compared and their synergy remains unexplored. In…

Computation and Language · Computer Science 2024-10-01 Siyue Zhang , Anh Tuan Luu , Chen Zhao

Document-grounded dialogue systems aim to answer user queries by leveraging external information. Previous studies have mainly focused on handling free-form documents, often overlooking structured data such as lists, which can represent a…

Computation and Language · Computer Science 2024-10-08 Mujeen Sung , Song Feng , James Gung , Raphael Shu , Yi Zhang , Saab Mansour

The wide adoption of Electronic Health Records (EHR) has resulted in large amounts of clinical data becoming available, which promises to support service delivery and advance clinical and informatics research. Deep learning techniques have…

Machine Learning · Computer Science 2022-02-14 Thanh Nguyen-Duc , Natasha Mulligan , Gurdeep S. Mannu , Joao H. Bettencourt-Silva

Uncertainty estimation is crucial for the reliability of safety-critical human and artificial intelligence (AI) interaction systems, particularly in the domain of healthcare engineering. However, a robust and general uncertainty measure for…

Computation and Language · Computer Science 2024-11-19 Zhiyuan Wang , Jinhao Duan , Chenxi Yuan , Qingyu Chen , Tianlong Chen , Yue Zhang , Ren Wang , Xiaoshuang Shi , Kaidi Xu

In recent years, Large Language Models (LLMs) have demonstrated an impressive ability to encode knowledge during pre-training on large text corpora. They can leverage this knowledge for downstream tasks like question answering (QA), even in…

Computation and Language · Computer Science 2024-06-11 Juraj Vladika , Phillip Schneider , Florian Matthes

Electronic Health Records (EHRs) and routine documentation practices play a vital role in patients' daily care, providing a holistic record of health, diagnoses, and treatment. However, complex and verbose EHR narratives overload healthcare…

Computation and Language · Computer Science 2025-02-26 Yanjun Gao , Ruizhe Li , Emma Croxford , John Caskey , Brian W Patterson , Matthew Churpek , Timothy Miller , Dmitriy Dligach , Majid Afshar

There is increasing evidence that question-answering (QA) systems with Large Language Models (LLMs), which employ a knowledge graph/semantic representation of an enterprise SQL database (i.e. Text-to-SPARQL), achieve higher accuracy…

Artificial Intelligence · Computer Science 2024-05-21 Dean Allemang , Juan Sequeda

Electronic Health Records (EHRs) offer considerable potential for clinical prediction, but their complexity and heterogeneity challenge traditional machine learning. Domain-specific EHR foundation models trained on unlabeled EHR data have…

Large-scale EHR prediction across institutions is hindered by substantial heterogeneity in schemas and code systems. Although Common Data Models (CDMs) can standardize records for multi-institutional learning, the manual harmonization and…

Computation and Language · Computer Science 2026-04-02 Kyunghoon Hur , Heeyoung Kwak , Jinsu Jang , Nakhwan Kim , Edward Choi

Question Answering (QA) systems provide easy access to the vast amount of knowledge without having to know the underlying complex structure of the knowledge. The research community has provided ad hoc solutions to the key QA tasks,…

Computation and Language · Computer Science 2019-06-11 Somayeh Asadifar , Mohsen Kahani , Saeedeh Shekarpour

Large Language Models (LLMs) are prone to hallucination, particularly in long-form generations. A promising direction to mitigate hallucination is to teach LLMs to express uncertainty explicitly when they lack sufficient knowledge. However,…

Computation and Language · Computer Science 2025-10-10 Ruihan Yang , Caiqi Zhang , Zhisong Zhang , Xinting Huang , Dong Yu , Nigel Collier , Deqing Yang

Accurate and efficient question-answering systems are essential for delivering high-quality patient care in the medical field. While Large Language Models (LLMs) have made remarkable strides across various domains, they continue to face…

Computation and Language · Computer Science 2025-01-22 Hang Yang , Hao Chen , Hui Guo , Yineng Chen , Ching-Sheng Lin , Shu Hu , Jinrong Hu , Xi Wu , Xin Wang

Deploying large language models for clinical Text-to-SQL requires distinguishing two qualitatively different causes of output diversity: (i) input ambiguity that should trigger clarification, and (ii) model instability that should trigger…

Computation and Language · Computer Science 2026-05-19 Angelo Ziletti , Leonardo D'Ambrosi

Existing question answering datasets focus on dealing with homogeneous information, based either only on text or KB/Table information alone. However, as human knowledge is distributed over heterogeneous forms, using homogeneous information…

Computation and Language · Computer Science 2021-05-13 Wenhu Chen , Hanwen Zha , Zhiyu Chen , Wenhan Xiong , Hong Wang , William Wang

The current mode of use of Electronic Health Record (EHR) elicits text redundancy. Clinicians often populate new documents by duplicating existing notes, then updating accordingly. Data duplication can lead to a propagation of errors,…

Computation and Language · Computer Science 2023-02-28 Thomas Searle , Zina Ibrahim , James Teo , Richard JB Dobson
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