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Understanding how animals learn is a central challenge in neuroscience, with growing relevance to the development of animal- or human-aligned artificial intelligence. However, existing approaches tend to assume fixed parametric forms for…

Machine Learning · Computer Science 2026-02-06 Yuhan Helena Liu , Victor Geadah , Jonathan Pillow

In this work, we propose the novel Prototypical Graph Regression Self-explainable Trees (ProGReST) model, which combines prototype learning, soft decision trees, and Graph Neural Networks. In contrast to other works, our model can be used…

Quantitative Methods · Quantitative Biology 2022-12-29 Dawid Rymarczyk , Daniel Dobrowolski , Tomasz Danel

We show that the error of iteratively magnitude-pruned networks empirically follows a scaling law with interpretable coefficients that depend on the architecture and task. We functionally approximate the error of the pruned networks,…

Machine Learning · Computer Science 2021-07-06 Jonathan S. Rosenfeld , Jonathan Frankle , Michael Carbin , Nir Shavit

Precise pose estimation of optical microrobots is essential for enabling high-precision object tracking and autonomous biological studies. However, current methods rely heavily on large, high-quality microscope image datasets, which are…

Computer Vision and Pattern Recognition · Computer Science 2025-11-21 Zongcai Tan , Lan Wei , Dandan Zhang

Machine-learning models are ubiquitous. In some domains, for instance, in medicine, the models' predictions must be interpretable. Decision trees, classification rules, and subgroup discovery are three broad categories of supervised…

Machine Learning · Computer Science 2022-04-29 Vadim Arzamasov , Benjamin Jochum , Klemens Böhm

We present a new paradigm for fine-tuning large-scale visionlanguage pre-trained models on downstream task, dubbed Prompt Regularization (ProReg). Different from traditional fine-tuning which easily overfits to the downstream task data,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-14 Beier Zhu , Yulei Niu , Saeil Lee , Minhoe Hur , Hanwang Zhang

Machine learning has proven to be a valuable tool to approximate functions in high-dimensional spaces. Unfortunately, analysis of these models to extract the relevant physics is never as easy as applying machine learning to a large dataset…

Materials Science · Physics 2020-05-06 Conrad W. Rosenbrock , Eric R. Homer , Gábor Csányi , Gus L. W. Hart

Physics-informed neural networks (PINNs) are extensively employed to solve partial differential equations (PDEs) by ensuring that the outputs and gradients of deep learning models adhere to the governing equations. However, constrained by…

Machine Learning · Computer Science 2025-07-21 Chenhao Si , Ming Yan

We show that neural networks trained by evolutionary reinforcement learning can enact efficient molecular self-assembly protocols. Presented with molecular simulation trajectories, networks learn to change temperature and chemical potential…

Statistical Mechanics · Physics 2020-06-01 Stephen Whitelam , Isaac Tamblyn

Studies on artificial neural networks rarely address both vanishing gradients and overfitting issues. In this study, we follow the pupil learning procedure, which has the features of interpreting, picking, understanding, cramming, and…

Machine Learning · Computer Science 2023-08-01 Rua-Huan Tsaih , Yu-Hang Chien , Shih-Yi Chien

Deep learning approaches have shown great success in image classification tasks and can aid greatly towards the fast and reliable classification of pollen grain aerial imagery. However, often-times deep learning methods in the setting of…

Computer Vision and Pattern Recognition · Computer Science 2021-03-01 Jaideep Murkute

Deep neural networks (DNNs) have become a widely deployed model for numerous machine learning applications. However, their fixed architecture, substantial training cost, and significant model redundancy make it difficult to efficiently…

Neural and Evolutionary Computing · Computer Science 2019-05-28 Xiaoliang Dai , Hongxu Yin , Niraj K. Jha

Standard deep-learning pipelines usually choose the network architecture before training and keep it fixed throughout optimization. In contrast, a model can also be adapted by editing its structure during training, for example by pruning…

Machine Learning · Computer Science 2026-05-18 Lute Lillo , Nick Cheney

The topological transitions that occur to the grain boundary network during grain growth in a material with uniform grain boundary energies are believed to be known. The same is not true for more realistic materials, since more general…

Materials Science · Physics 2021-10-29 Erdem Eren , Jeremy K. Mason

A linear bubble model of grain growth is introduced to study the conditions under which an isolated grain can grow to a size much larger than the surrounding matrix average (abnormal growth). We first consider the case of bubbles of two…

Materials Science · Physics 2007-05-23 W. W. Mullins , Jorge Vinals

One of the major challenges in machine learning nowadays is to provide predictions with not only high accuracy but also user-friendly explanations. Although in recent years we have witnessed increasingly popular use of deep neural networks…

Machine Learning · Computer Science 2019-07-24 Yao Ming , Panpan Xu , Huamin Qu , Liu Ren

We present a deformable prototypical part network (Deformable ProtoPNet), an interpretable image classifier that integrates the power of deep learning and the interpretability of case-based reasoning. This model classifies input images by…

Computer Vision and Pattern Recognition · Computer Science 2024-05-06 Jon Donnelly , Alina Jade Barnett , Chaofan Chen

Most deep neural networks are trained under fixed network architectures and require retraining when the architecture changes. If expanding the network's size is needed, it is necessary to retrain from scratch, which is expensive. To avoid…

Machine Learning · Computer Science 2023-11-09 Chau Pham , Piotr Teterwak , Soren Nelson , Bryan A. Plummer

Physics-Informed Neural Networks (PINNs) have become a popular way to infer interpretable interaction parameters from noisy microbial time series, but practitioners face many tunable design choices (loss weights, regularisers, scaling,…

Quantitative Methods · Quantitative Biology 2025-09-03 Pedro Fontanarrosa , Chris P Barnes

We propose a semiparametric model for autonomous nonlinear dynamical systems and devise an estimation procedure for model fitting. This model incorporates subject-specific effects and can be viewed as a nonlinear semiparametric mixed…

Applications · Statistics 2011-12-01 Debashis Paul , Jie Peng , Prabir Burman