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In a directed graph, a kernel is a subset of vertices that is both stable and absorbing. Not all digraphs have a kernel, but a theorem due to Boros and Gurvich guarantees the existence of a kernel in every clique-acyclic orientation of a…

Discrete Mathematics · Computer Science 2018-01-09 Adèle Pass-Lanneau , Ayumi Igarashi , Frédéric Meunier

A directed graph $D=(V(D),A(D))$ has a kernel if there exists an independent set $K\subseteq V(D)$ such that every vertex $v\in V(D)-K$ has an ingoing arc $u\mathbin{\longrightarrow}v$ for some $u\in K$. There are directed graphs that do…

Combinatorics · Mathematics 2021-10-05 Allan van Hulst

An independent vertex subset $S$ of the directed graph $G$ is a kernel if the set of out-neighbors of $S$ is $V(G)\setminus S$. An independent vertex subset $Q$ of $G$ is a quasi-kernel if the union of the first and second out-neighbors…

Combinatorics · Mathematics 2024-05-30 Péter L. Erdős , Ervin Győri , Tamás Róbert Mezei , Nika Salia , Mykhaylo Tyomkyn

Point clouds are sets of points in two or three dimensions. Most kernel methods for learning on sets of points have not yet dealt with the specific geometrical invariances and practical constraints associated with point clouds in computer…

Machine Learning · Computer Science 2007-12-21 Francis Bach

It is well known that kernels in graphs are powerful and useful structures, for instance in the theory of games. However, a kernel does not always exist and Chv\'atal proved in 1973 that it is an NP-Complete problem to decide its existence.…

Combinatorics · Mathematics 2007-10-09 Serge Burckel

We present novel graph kernels for graphs with node and edge labels that have ordered neighborhoods, i.e. when neighbor nodes follow an order. Graphs with ordered neighborhoods are a natural data representation for evolving graphs where…

Machine Learning · Computer Science 2018-05-30 Moez Draief , Konstantin Kutzkov , Kevin Scaman , Milan Vojnovic

Graph kernels have been successfully applied to many graph classification problems. Typically, a kernel is first designed, and then an SVM classifier is trained based on the features defined implicitly by this kernel. This two-stage…

In the present paper, we study algorithmic questions for the arc-intersection graph of directed paths on a tree. Such graphs are known to be perfect (proved by Monma and Wei in 1986). We present faster algorithms than all previously known…

Discrete Mathematics · Computer Science 2009-02-10 Olivier Durand de Gévigney , Frédéric Meunier , Christian Popa , Julien Reygner , Ayrin Romero

We introduce the first graph kernels for metric graphs via tropical algebraic geometry. In contrast to conventional graph kernels based on graph combinatorics such as nodes, edges, and subgraphs, our metric graph kernels are purely based on…

Machine Learning · Computer Science 2026-01-30 Yueqi Cao , Anthea Monod

A {\em kernel by properly colored paths} of an arc-colored digraph $D$ is a set $S$ of vertices of $D$ such that (i) no two vertices of $S$ are connected by a properly colored directed path in $D$, and (ii) every vertex outside $S$ can…

Combinatorics · Mathematics 2017-04-28 Yandong Bai , Shinya Fujita , Shenggui Zhang

Graph kernels have become an established and widely-used technique for solving classification tasks on graphs. This survey gives a comprehensive overview of techniques for kernel-based graph classification developed in the past 15 years. We…

Machine Learning · Computer Science 2020-02-05 Nils M. Kriege , Fredrik D. Johansson , Christopher Morris

Subgraph isomorphism counting is known as #P-complete and requires exponential time to find the accurate solution. Utilizing representation learning has been shown as a promising direction to represent substructures and approximate the…

Machine Learning · Computer Science 2024-05-14 Xin Liu , Weiqi Wang , Jiaxin Bai , Yangqiu Song

The availability of graph data with node attributes that can be either discrete or real-valued is constantly increasing. While existing kernel methods are effective techniques for dealing with graphs having discrete node labels, their…

Machine Learning · Computer Science 2024-10-30 Giovanni Da San Martino , Nicolò Navarin , Alessandro Sperduti

We present a unified framework to study graph kernels, special cases of which include the random walk graph kernel \citep{GaeFlaWro03,BorOngSchVisetal05}, marginalized graph kernel \citep{KasTsuIno03,KasTsuIno04,MahUedAkuPeretal04}, and…

Machine Learning · Computer Science 2010-11-30 S. V. N. Vishwanathan , Karsten M. Borgwardt , Imre Risi Kondor , Nicol N. Schraudolph

Nowhere dense classes of graphs are very general classes of uniformly sparse graphs with several seemingly unrelated characterisations. From an algorithmic perspective, a characterisation of these classes in terms of uniform quasi-wideness,…

Discrete Mathematics · Computer Science 2018-09-06 Stephan Kreutzer , Roman Rabinovich , Sebastian Siebertz

Given a directed graph G=(V,E) an independent set A of the vertices V is called quasi-kernel (quasi-sink) iff for each point v there is a path of length at most 2 from some point of A to v (from v to some point of A). Every finite directed…

Combinatorics · Mathematics 2007-12-06 Peter L. Erdos , Lajos Soukup

In a digraph, a kernel is a subset of vertices that is both independent and absorbing. Kernels have important applications in combinatorics and outside. Kernels do not always exist and finding sufficient conditions ensuring their existence…

Combinatorics · Mathematics 2025-02-05 Hélène Langlois , Frédéric Meunier

We introduce a family of multilayer graph kernels and establish new links between graph convolutional neural networks and kernel methods. Our approach generalizes convolutional kernel networks to graph-structured data, by representing…

Machine Learning · Statistics 2020-06-30 Dexiong Chen , Laurent Jacob , Julien Mairal

It is well known that determining if a digraph has a kernel is an NP-complete problem. However, Topp proved that when subdividing every arc of a digraph we obtain a digraph with a kernel. In this paper we define the kernel subdivision…

Combinatorics · Mathematics 2023-12-29 Teresa I. Hoekstra-Mendoza , Miguel E. Licona-Velázquez , Rocío Rojas-Monroy

We show that problems which have finite integer index and satisfy a requirement we call treewidth-bounding admit linear kernels on the class of $H$-topological-minor free graphs, for an arbitrary fixed graph $H$. This builds on earlier…

Data Structures and Algorithms · Computer Science 2012-07-16 Alexander Langer , Felix Reidl , Peter Rossmanith , Somnath Sikdar
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