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Machine learning methods have shown promise in predicting molecular properties, and given sufficient training data machine learning approaches can enable rapid high-throughput virtual screening of large libraries of compounds. Graph-based…

Model predictive control (MPC) is a popular approach for trajectory optimization in practical robotics applications. MPC policies can optimize trajectory parameters under kinodynamic and safety constraints and provide guarantees on safety,…

Robotics · Computer Science 2023-06-08 Returaj Burnwal , Anirban Santara , Nirav P. Bhatt , Balaraman Ravindran , Gaurav Aggarwal

Predictive machine learning models generally excel on in-distribution data, but their performance degrades on out-of-distribution (OOD) inputs. Reliable deployment therefore requires robust OOD detection, yet this is particularly…

Machine Learning · Computer Science 2026-02-19 David Graber , Victor Armegioiu , Rebecca Buller , Siddhartha Mishra

Molecular structure generation is a fundamental problem that involves determining the 3D positions of molecules' constituents. It has crucial biological applications, such as molecular docking, protein folding, and molecular design. Recent…

Machine Learning · Computer Science 2025-08-27 Wenyin Zhou , Christopher Iliffe Sprague , Vsevolod Viliuga , Matteo Tadiello , Arne Elofsson , Hossein Azizpour

Anomaly detection is often considered a challenging field of machine learning due to the difficulty of obtaining anomalous samples for training and the need to obtain a sufficient amount of training data. In recent years, autoencoders have…

Machine Learning · Computer Science 2018-10-15 Yotam Intrator , Gilad Katz , Asaf Shabtai

This article proposes an active learning method for high dimensional data, based on intrinsic data geometries learned through diffusion processes on graphs. Diffusion distances are used to parametrize low-dimensional structures on the…

Machine Learning · Computer Science 2019-05-31 Mauro Maggioni , James M. Murphy

Diffusion models, a family of generative models based on deep learning, have become increasingly prominent in cutting-edge machine learning research. With a distinguished performance in generating samples that resemble the observed data,…

Machine Learning · Computer Science 2023-05-02 Lequan Lin , Zhengkun Li , Ruikun Li , Xuliang Li , Junbin Gao

Machine learning (ML) offers considerable promise for the design of new molecules and materials. In real-world applications, the design problem is often domain-specific, and suffers from insufficient data, particularly labeled data, for ML…

Chemical Physics · Physics 2025-02-04 Ming Han , Ge Sun , Juan J. de Pablo

In the quest to understand how structure and dynamics are connected in glasses, a number of machine learning based methods have been developed that predict dynamics in supercooled liquids. These methods include both increasingly complex…

Soft Condensed Matter · Physics 2022-06-08 Rinske M. Alkemade , Emanuele Boattini , Laura Filion , Frank Smallenburg

Accurate and controllable image editing is a challenging task that has attracted significant attention recently. Notably, DragGAN is an interactive point-based image editing framework that achieves impressive editing results with…

Computer Vision and Pattern Recognition · Computer Science 2024-04-09 Yujun Shi , Chuhui Xue , Jun Hao Liew , Jiachun Pan , Hanshu Yan , Wenqing Zhang , Vincent Y. F. Tan , Song Bai

Distributed coevolutionary Generative Adversarial Network (GAN) training has empirically shown success in overcoming GAN training pathologies. This is mainly due to diversity maintenance in the populations of generators and discriminators…

Neural and Evolutionary Computing · Computer Science 2020-08-05 Jamal Toutouh , Erik Hemberg , Una-May O'Reilly

The most popular and universally predictive protein simulation models employ all-atom molecular dynamics (MD), but they come at extreme computational cost. The development of a universal, computationally efficient coarse-grained (CG) model…

Correcting measured detector-level distributions to particle-level is essential to make data usable outside the experimental collaborations. The term unfolding is used to describe this procedure. A new method of unfolding data using a…

Data Analysis, Statistics and Probability · Physics 2018-08-07 Kaustuv Datta , Deepak Kar , Debarati Roy

Molecular property prediction is one of the fastest-growing applications of deep learning with critical real-world impacts. Including 3D molecular structure as input to learned models improves their performance for many molecular tasks.…

Molecular dynamics (MD) has served as a powerful tool for designing materials with reduced reliance on laboratory testing. However, the use of MD directly to treat the deformation and failure of materials at the mesoscale is still largely…

Materials Science · Physics 2023-01-12 Huaiqian You , Xiao Xu , Yue Yu , Stewart Silling , Marta D'Elia , John Foster

Traditional molecule generation methods often rely on sequence- or graph-based representations, which can limit their expressive power or require complex permutation-equivariant architectures. This paper introduces a novel paradigm for…

Machine Learning · Computer Science 2025-02-18 Van Khoa Nguyen , Maciej Falkiewicz , Giangiacomo Mercatali , Alexandros Kalousis

Maximum likelihood (ML) learning for energy-based models (EBMs) is challenging, partly due to non-convergence of Markov chain Monte Carlo.Several variations of ML learning have been proposed, but existing methods all fail to achieve both…

Machine Learning · Statistics 2023-04-24 Xinwei Zhang , Zhiqiang Tan , Zhijian Ou

Given a segment of time series of a system at a particular set of parameter values, can one infers the global behavior of the system in its parameter space? Here we show that by using a learning machine we can achieve such a goal to a…

Adaptation and Self-Organizing Systems · Physics 2022-04-15 Hong Zhao

Molecular representation learning has shown great success in advancing AI-based drug discovery. The core of many recent works is based on the fact that the 3D geometric structure of molecules provides essential information about their…

Machine Learning · Computer Science 2024-10-23 Jiying Zhang , Zijing Liu , Yu Wang , Yu Li

The development of generative design driven by artificial intelligence algorithms is speedy. There are two research gaps in the current research: 1) Most studies only focus on the relationship between design elements and pay little…

Computer Vision and Pattern Recognition · Computer Science 2023-12-19 Ran Chen , Xingjian Yi , Jing Zhao , Yueheng He , Bainian Chen , Xueqi Yao , Fangjun Liu , Haoran Li , Zeke Lian