Related papers: The Polyhedral Tree Complex
Arboreal networks are multi-rooted phylogenetic networks whose underlying graph is a tree. We give an encoding of stack-free arboreal networks in terms of triplets and the novel concept of a duet. This yields a polynomial time algorithm to…
A phylogenetic tree is an acyclic graph with distinctly labeled leaves, whose internal edges have a positive weight. Given a set of n leaves, the collection of all phylogenetic trees with this leaf set can be assembled into a metric cube…
Motivated by the theory of cluster algebras, F. Chapoton, S. Fomin and A. Zelevinsky associated to each finite type root system a simple convex polytope called \emph{generalized associahedron}. They provided an explicit realization of this…
We prove that numerous negatively curved simply connected locally compact polyhedral complexes, admitting a discrete cocompact group of automorphisms, have automorphism groups which are locally compact, uncountable, non linear and virtually…
In this research announcement we associate to each convex polytope, possibly nonrational and nonsimple, a family of compact spaces that are stratified by quasifolds, i.e. the strata are locally modelled by $\R^k$ modulo the action of a…
We give a precise description of combed trees in terms of Kelly-Mac Lane graphs. We show that any combed tree is uniquely expressed as an allowable Kelly-Mac Lane graph of a certain shape. Conversely, we show that any such Kelly-Mac Lane…
In this article, we discuss the vertex decomposability of three well-studied simplicial complexes associated to forests. In particular, we show that the bounded degree complex of a forest and the complex of directed trees of a multidiforest…
In this paper we define spherical complexes as simplicial complexes with the property that every subcomplex obtained by a sequence of links and deletions either has trivial homology, or has the homology of a sphere. Examples of such…
Periodic trees are combinatorial structures which are in bijection with cluster tilting objects in cluster categories of affine type $\tilde{A}_{n-1}$. The internal edges of the tree encode the $c$-vectors corresponding to the cluster…
The aim of the paper is to give an `elementary' introduction to the theory of modules over operads and discuss three prominent examples of these objects - simplex, associahedron (= the Stasheff polyhedron) and cyclohedron (= the…
In the early 1990s, a family of combinatorial CW-complexes named permutoassociahedra was introduced by Kapranov, and it was realized by Reiner and Ziegler as a family of convex polytopes. The polytopes in this family are "hybrids" of…
In this paper, we investigate vector fields on polyhedral complexes and their associated trajectories. We study vector fields which are analogue of the gradient vector field of a function in the smooth case. Our goal is to define a nice…
We consider unicellular maps, or polygon gluings, of fixed genus. A few years ago the first author gave a recursive bijection transforming unicellular maps into trees, explaining the presence of Catalan numbers in counting formulas for…
We describe a new sequence of polytopes which characterize A_infinity maps from a topological monoid to an A_infinity space. Therefore each of these polytopes is a quotient of the corresponding multiplihedron. Later term(s) in our sequence…
Contour trees have been developed to visualize or encode scalar data in imaging technologies and scientific simulations. Contours are defined on a continuous scalar field. For discrete data, a continuous function is first interpolated,…
This article is concerned with the approximation of unbounded convex sets by polyhedra. While there is an abundance of literature investigating this task for compact sets, results on the unbounded case are scarce. We first point out the…
In this paper we report on results of our investigation into the algebraic structure supported by the combinatorial geometry of the cyclohedron. Our new graded algebra structures lie between two well known Hopf algebras: the…
We compare three basic kinds of discrete mathematical models used to portray phylogenetic relationships among species and higher taxa: phylogenetic trees, Hennig trees and Nelson cladograms. All three models are trees, as that term is…
We investigate the structure of trees that have minimal algebraic connectivity among all trees with a given degree sequence. We show that such trees are caterpillars and that the vertex degrees are non-decreasing on every path on…
We give a decomposition of the suspension of a polyhedral join in terms of the polyhedral smash product of the suspension of the family of pairs, and study some cases in which the formula can be desuspended, particularly for polyhedral…