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We present a Python toolbox for holographic and tomographic X-ray imaging. It comprises a collection of phase retrieval algorithms for the deeply holographic and direct contrast imaging regimes, including non-linear approaches and extended…

Optics · Physics 2025-11-03 Jens Lucht , Paul Meyer , Leon Merten Lohse , Tim Salditt

We present PyMoosh, a Python-based simulation library designed to provide a comprehensive set of numerical tools allowing to compute essentially all optical characteristics of multilayered structures, ranging from reflectance and…

We present Gridap, a new scientific software library for the numerical approximation of partial differential equations (PDEs) using grid-based approximations. Gridap is an open-source software project exclusively written in the Julia…

Mathematical Software · Computer Science 2020-04-23 Francesc Verdugo , Santiago Badia

In this paper we present an open source framework developed in Python and consisting of three distinct classes designed to manipulate in a simple and intuitive way both symbolic representations of neutrosophic sets over universes of various…

Artificial Intelligence · Computer Science 2024-04-10 Giorgio Nordo , Saeid Jafari , Arif Mehmood , Bhimraj Basumatary

We describe a new visualization tool, dubbed HCMapper, that visually helps to compare a pair of dendrograms computed on the same dataset by displaying multiscale partition-based layered structures. The dendrograms are obtained by…

Human-Computer Interaction · Computer Science 2016-02-23 Gautier Marti , Philippe Donnat , Frank Nielsen , Philippe Very

This article introduces Unsub Extender, a free tool to help libraries analyze their Unsub data export files. Unsub is a collection development dashboard that gathers and forecasts journal-level usage metrics to provide academic libraries…

Digital Libraries · Computer Science 2022-10-26 Eric Schares

Narrative visualization is a powerful communicative tool that can take on various formats such as interactive articles, slideshows, and data videos. These formats each have their strengths and weaknesses, but existing authoring tools only…

Human-Computer Interaction · Computer Science 2022-05-23 Matthew Conlen , Jeffrey Heer

Simulators play a critical role in aerial robotics both in and out of the classroom. We present RotorPy, a simulation environment written entirely in Python intentionally designed to be a lightweight and accessible tool for robotics…

Robotics · Computer Science 2023-06-08 Spencer Folk , James Paulos , Vijay Kumar

The aim of this paper is to give a presentation of the Python toolbox YALTAPy dedicated to the stability study of standard and fractional delay systems as well as its online version YALTAPy_Online. Both toolboxes are derived from YALTA…

Optimization and Control · Mathematics 2022-12-13 Hugo Cavalera , Jayvir Raj , Guilherme Mazanti , Catherine Bonnet

The pyFAI package has been designed to reduce X-ray diffraction images into powder diffraction curves to be further processed by scientists. This contribution describes how to convert an image into a radial profile using the Numpy package,…

Instrumentation and Methods for Astrophysics · Physics 2014-12-22 Jérôme Kieffer , Giannis Ashiotis

This is a companion Focus Demonstration article to the PyMUSE python package, demonstrating its usage and utilities for VLT/MUSE data analysis, that include a wide range of options for spectra extractions, the creation of different types of…

Instrumentation and Methods for Astrophysics · Physics 2018-03-20 Ismael Pessa , Nicolas Tejos , Cristobal Moya

We present DeepAL, a Python library that implements several common strategies for active learning, with a particular emphasis on deep active learning. DeepAL provides a simple and unified framework based on PyTorch that allows users to…

Machine Learning · Computer Science 2021-12-01 Kuan-Hao Huang

Fermipy is an open-source python framework that facilitates analysis of data collected by the Fermi Large Area Telescope (LAT). Fermipy is built on the Fermi Science Tools, the publicly available software suite provided by NASA for the LAT…

Instrumentation and Methods for Astrophysics · Physics 2019-08-14 Matthew Wood , Regina Caputo , Eric Charles , Mattia Di Mauro , Jeffrey Magill , Jeremy Perkins

Visualization of data is an important step in the understanding of data and the evaluation of statistical models. Topological Data Analysis Ball Mapper (TDABM) after Dlotko (2019), provides a model free means to visualize multivariate…

Methodology · Statistics 2025-05-14 Simon Rudkin

Literate programming - the bringing together of program code and natural language narratives - has become a ubiquitous approach in the realm of data science. This methodology is appealing as well for the domain of Density Functional Theory…

A holographic microscope captures interference patterns, or holograms, that encode three-dimensional (3D) information about the object being viewed. Computation is essential to extracting that 3D information. By wrapping low-level…

Image and Video Processing · Electrical Eng. & Systems 2018-06-04 Solomon Barkley , Thomas G. Dimiduk , Jerome Fung , David M. Kaz , Vinothan N. Manoharan , Ryan McGorty , Rebecca W. Perry , Anna Wang

Distributed, large-scale quantum computing will need architectures that combine matter-based qubits with photonic links, but today's software stacks target either gate-based chips or linear-optical devices in isolation. We introduce Optyx,…

In the AI-for-science era, scientific computing scenarios such as concurrent learning and high-throughput computing demand a new generation of infrastructure that supports scalable computing resources and automated workflow management on…

The lattice Boltzmann method (LBM) has emerged as a prominent technique for solving fluid dynamics problems due to its algorithmic potential for computational scalability. We introduce XLB library, a Python-based differentiable LBM library…

Computational Physics · Physics 2024-04-03 Mohammadmehdi Ataei , Hesam Salehipour

FCMpy is an open source package in Python for building and analyzing Fuzzy Cognitive Maps. More specifically, the package allows 1) deriving fuzzy causal weights from qualitative data, 2) simulating the system behavior, 3) applying machine…

Mathematical Software · Computer Science 2022-11-03 Samvel Mkhitaryan , Philippe J. Giabbanelli , Maciej K. Wozniak , Gonzalo Napoles , Nanne K. de Vries , Rik Crutzen