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We developed a high-performance one-stop system for large-scale genome data analysis with secure secondary use of the data by the data owner and multiple users with different levels of data access control.

Scientific workflows are becoming increasingly popular for compute-intensive and data-intensive scientific applications. The vision and promise of scientific workflows includes rapid, easy workflow design, reuse, scalable execution, and…

Databases · Computer Science 2013-11-26 Víctor Cuevas-Vicenttín , Saumen Dey , Sven Köhler , Sean Riddle , Bertram Ludäscher

Modern tools for biological research, especially microscopy, have rapidly advanced in recent years, which has led to the generation of increasingly large amounts of data on a regular basis. The result is that scientists desperately need…

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Data sharing is fundamental to scientific progress, enhancing transparency, reproducibility, and innovation across disciplines. Despite its growing significance, the variability of data-sharing practices across research fields remains…

Digital Libraries · Computer Science 2025-02-04 Puyu Yang , Giovanni Colavizza

The ways of communication and social interactions are changing. Web users are becoming increasingly engaged with Online Social Networks (OSN), which has a significant impact on the relationship mechanisms between individuals and…

Social and Information Networks · Computer Science 2018-09-11 Lucas V. A. Caldas , Antonio F. L. Jacob , Simone S. C. Silva , Fernando A. R. Pontes , Fábio M. F. Lobato

Cybersecurity is a very challenging topic of research nowadays, as digitalization increases the interaction of people, software and services on the Internet by means of technology devices and networks connected to it. The field is broad and…

Artificial Intelligence · Computer Science 2021-07-02 Nuno Oliveira , Norberto Sousa , Isabel Praça

Nowadays, science has been coming into a new paradigm, called data-intensive science. While current studies of the new phenomenon focused on building up infrastructure for this new paradigm, yet a few studies concern users of scientific…

Instrumentation and Methods for Astrophysics · Physics 2011-02-08 Jian Zhang , Chaomei Chen , Michael S. Vogeley

The field of data science currently enjoys a broad definition that includes a wide array of activities which borrow from many other established fields of study. Having such a vague characterization of a field in the early stages might be…

Other Statistics · Statistics 2021-05-14 Roger D. Peng , Hilary S. Parker

This paper describes a vision and work in progress to elevate network resources and data transfer management to the same level as compute and storage in the context of services access, scheduling, life cycle management, and orchestration.…

Networking and Internet Architecture · Computer Science 2022-03-22 Tom Lehman , Xi Yang , Chin Guok , Frank Wuerthwein , Igor Sfiligoi , John Graham , Aashay Arora , Dima Mishin , Diego Davila , Jonathan Guiang , Tom Hutton , Harvey Newman , Justas Balcas

The popularity and rapid development of Cloud Computing in recent years has led to a vast number of publications capturing the accumulated knowledge in this field. Due to the interdisciplinary nature and significant relevance of cloud…

Computer Science and Game Theory · Computer Science 2026-05-26 Smruti Rekha Swain

Genomic data sets are growing dramatically as the cost of sequencing continues to decline and small sequencing devices become available. Enormous community databases store and share this data with the research community, but some of these…

Quantum computing (QC) is an emerging computing paradigm with potential to revolutionize the field of computing. QC is a field that is quickly developing globally and has high barriers of entry. In this paper we explore both successful…

Software Engineering · Computer Science 2022-06-16 Ruslan Shaydulin , Caleb Thomas , Paige Rodeghero

Data Science is a complex and evolving field, but most agree that it can be defined as a combination of expertise drawn from three broad areascomputer science and technology, math and statistics, and domain knowledge -- with the purpose of…

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The emergence and popularization of online social networks suddenly made available a large amount of data from social organization, interaction and human behavior. All this information opens new perspectives and challenges to the study of…

Social and Information Networks · Computer Science 2016-04-05 David Burth Kurka , Alan Godoy , Fernando J. Von Zuben

Reproducibility should be a cornerstone of science as it enables validation and reuse. In recent years, the scientific community and the general public became increasingly aware of the reproducibility crisis, i.e. the wide-spread inability…

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With the shifting focus of organizations and governments towards digitization of academic and technical documents, there has been an increasing need to use this reserve of scholarly documents for developing applications that can facilitate…

Digital Libraries · Computer Science 2016-06-07 Samiya Khan , Kashish A. Shakil , Mansaf Alam

The amount of sequence data obtained from ancient samples has dramatically expanded in the last decade, and so have the types of questions that can now be addressed using ancient DNA. In the field of human history, while ancient DNA has…

Populations and Evolution · Quantitative Biology 2020-01-08 Fernando Racimo , Martin Sikora , Hannes Schroeder , Carles Lalueza-Fox

Sharing scientific data, with the objective of making it fully discoverable, accessible, assessable, intelligible, usable, and interoperable, requires work at the disciplinary level to define in particular how the data should be formatted…

Instrumentation and Methods for Astrophysics · Physics 2017-10-19 Françoise Genova , Christophe Arviset , Bridget M. Almas , Laura Bartolo , Daan Broeder , Emily Law , Brian McMahon

Network science has become an essential interdisciplinary tool for understanding complex biological systems. However, because these systems undergo continuous, often stimulus-driven changes in both structure and function, traditional static…

Molecular Networks · Quantitative Biology 2025-05-19 Abir Khazaal , Fatemeh Vafaee

Graph kernels have attracted a lot of attention during the last decade, and have evolved into a rapidly developing branch of learning on structured data. During the past 20 years, the considerable research activity that occurred in the…

Machine Learning · Statistics 2021-11-25 Giannis Nikolentzos , Giannis Siglidis , Michalis Vazirgiannis