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A graph is temporally connected if there exists a strict temporal path, i.e. a path whose edges have strictly increasing labels, from every vertex $u$ to every other vertex $v$. In this paper we study temporal design problems for undirected…

Data Structures and Algorithms · Computer Science 2022-05-03 Nina Klobas , George B. Mertzios , Hendrik Molter , Paul G. Spirakis

We present a deterministic near-linear time algorithm that computes the edge-connectivity and finds a minimum cut for a simple undirected unweighted graph G with n vertices and m edges. This is the first o(mn) time deterministic algorithm…

Data Structures and Algorithms · Computer Science 2018-10-30 Ken-ichi Kawarabayashi , Mikkel Thorup

The Minimum Linear Arrangement problem (MLA) consists of finding a mapping $\pi$ from vertices of a graph to distinct integers that minimizes $\sum_{\{u,v\}\in E}|\pi(u) - \pi(v)|$. In that setting, vertices are often assumed to lie on a…

Data Structures and Algorithms · Computer Science 2025-11-05 Lluís Alemany-Puig , Juan Luis Esteban , Ramon Ferrer-i-Cancho

Graph embedding provides an efficient solution for graph analysis by converting the graph into a low-dimensional space which preserves the structure information. In contrast to the graph structure data, the i.i.d. node embedding can be…

Machine Learning · Computer Science 2017-05-16 Hongyun Cai , Vincent W. Zheng , Kevin Chen-Chuan Chang

Assumption-Based Argumentation (ABA) is a powerful structured argumentation formalism, but exact computation of extensions under stable semantics is intractable for large frameworks. We present the first Graph Neural Network (GNN) approach…

Artificial Intelligence · Computer Science 2025-11-18 Preesha Gehlot , Anna Rapberger , Fabrizio Russo , Francesca Toni

Depth first search (DFS) tree is one of the most well-known data structures for designing efficient graph algorithms. Given an undirected graph $G=(V,E)$ with $n$ vertices and $m$ edges, the textbook algorithm takes $O(n+m)$ time to…

Data Structures and Algorithms · Computer Science 2018-02-21 Lijie Chen , Ran Duan , Ruosong Wang , Hanrui Zhang , Tianyi Zhang

We show that every labelled planar graph $G$ can be assigned a canonical embedding $\phi(G)$, such that for any planar $G'$ that differs from $G$ by the insertion or deletion of one edge, the number of local changes to the combinatorial…

Data Structures and Algorithms · Computer Science 2019-10-22 Jacob Holm , Eva Rotenberg

Evolving graphs arise in problems where interrelations between data change over time. We present a breadth first search (BFS) algorithm for evolving graphs that computes the most direct influences between nodes at two different times. Using…

Social and Information Networks · Computer Science 2016-03-07 Jiahao Chen , Weijian Zhang

We consider the fundamental algorithmic problem of finding a cycle of minimum weight in a weighted graph. In particular, we show that the minimum weight cycle problem in an undirected n-node graph with edge weights in {1,...,M} or in a…

Data Structures and Algorithms · Computer Science 2011-04-15 Liam Roditty , Virginia Vassilevska Williams

In the classic longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, over an alphabet of size $\sigma$, and we are asked to find a longest string occurring as a fragment of both $S$ and…

Data Structures and Algorithms · Computer Science 2025-11-18 Panagiotis Charalampopoulos , Tomasz Kociumaka , Jakub Radoszewski , Solon P. Pissis

This paper considers the graph signal processing problem of anomaly detection in time series of graphs. We examine two related, complementary inference tasks: the detection of anomalous graphs within a time series, and the detection of…

Recent work has established that, for every positive integer $k$, every $n$-node graph has a $(2k-1)$-spanner on $O(f^{1-1/k} n^{1+1/k})$ edges that is resilient to $f$ edge or vertex faults. For vertex faults, this bound is tight. However,…

Data Structures and Algorithms · Computer Science 2021-02-24 Greg Bodwin , Michael Dinitz , Caleb Robelle

A well-studied challenge that arises in the structure learning problem of causal directed acyclic graphs (DAG) is that using observational data, one can only learn the graph up to a "Markov equivalence class" (MEC). The remaining undirected…

Machine Learning · Computer Science 2022-05-20 Vibhor Porwal , Piyush Srivastava , Gaurav Sinha

Depth first search (DFS) tree is a fundamental data structure for solving graph problems. The classical algorithm [SiComp74] for building a DFS tree requires $O(m+n)$ time for a given graph $G$ having $n$ vertices and $m$ edges. Recently,…

Data Structures and Algorithms · Computer Science 2017-05-11 Shahbaz Khan

We propose polynomial-time algorithms that sparsify planar and bounded-genus graphs while preserving optimal or near-optimal solutions to Steiner problems. Our main contribution is a polynomial-time algorithm that, given an unweighted graph…

Data Structures and Algorithms · Computer Science 2017-07-12 Marcin Pilipczuk , Michał Pilipczuk , Piotr Sankowski , Erik Jan van Leeuwen

In this paper we reassess the parameterized complexity and approximability of the well-studied Steiner Forest problem in several graph classes of bounded width. The problem takes an edge-weighted graph and pairs of vertices as input, and…

Data Structures and Algorithms · Computer Science 2024-07-26 Andreas Emil Feldmann , Michael Lampis

Aligning a sequence to a walk in a labeled graph is a problem of fundamental importance to Computational Biology. For finding a walk in an arbitrary graph with $|E|$ edges that exactly matches a pattern of length $m$, a lower bound based on…

Data Structures and Algorithms · Computer Science 2022-02-01 Daniel Gibney , Sharma V. Thankachan , Srinivas Aluru

Link sign prediction on a signed graph is a task to determine whether the relationship represented by an edge is positive or negative. Since the presence of negative edges violates the graph homophily assumption that adjacent nodes are…

Machine Learning · Computer Science 2026-03-06 Jinkyu Sung , Myunggeum Jee , Joonseok Lee

Unbalanced translocations are among the most frequent chromosomal alterations, accounted for 30\% of all losses of heterozygosity, a major genetic event causing inactivation of tumor suppressor genes. Despite of their central role in…

Data Structures and Algorithms · Computer Science 2018-12-04 Domenico Cantone , Simone Faro , Arianna Pavone

Sublinear time algorithms for approximating maximum matching size have long been studied. Much of the progress over the last two decades on this problem has been on the algorithmic side. For instance, an algorithm of Behnezhad [FOCS'21]…

Data Structures and Algorithms · Computer Science 2022-11-30 Soheil Behnezhad , Mohammad Roghani , Aviad Rubinstein