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Efficient construction of the suffix tree given an input text is an active area of research from the time it was first introduced. Both theoretical computer scientists and engineers tackled the problem. In this paper we focus on the fastest…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-10-03 Matevž Jekovec , Andrej Brodnik

This paper gives a new deterministic algorithm for the dynamic Minimum Spanning Forest (MSF) problem in the EREW PRAM model, where the goal is to maintain a MSF of a weighted graph with $n$ vertices and $m$ edges while supporting edge…

Data Structures and Algorithms · Computer Science 2018-05-17 Tsvi Kopelowitz , Ely Porat , Yair Rosenmutter

Temporal graph neural networks have shown promising results in learning inductive representations by automatically extracting temporal patterns. However, previous works often rely on complex memory modules or inefficient random walk methods…

Machine Learning · Computer Science 2024-01-10 Mohammad Ali Alomrani , Mahdi Biparva , Yingxue Zhang , Mark Coates

Depth first search (DFS) tree is a fundamental data structure for solving various problems in graphs. It is well known that it takes $O(m+n)$ time to build a DFS tree for a given undirected graph $G=(V,E)$ on $n$ vertices and $m$ edges. We…

Data Structures and Algorithms · Computer Science 2018-02-08 Surender Baswana , Shreejit Ray Chaudhury , Keerti Choudhary , Shahbaz Khan

A signed tree model of a graph $G$ is a compact binary structure consisting of a rooted binary tree whose leaves are bijectively mapped to the vertices of $G$, together with 2-colored edges $xy$, called transversal pairs, interpreted as…

Data Structures and Algorithms · Computer Science 2026-02-19 Édouard Bonnet , Colin Geniet , Eun Jung Kim , Sungmin Moon

Computing the Euler genus of a graph is a fundamental problem in graph theory and topology. It has been shown to be NP-hard by [Thomassen '89] and a linear-time fixed-parameter algorithm has been obtained by [Mohar '99]. Despite extensive…

Data Structures and Algorithms · Computer Science 2014-12-05 Ken-ichi Kawarabayashi , Anastasios Sidiropoulos

We construct $n$-node graphs on which any $O(n)$-size spanner has additive error at least $+\Omega(n^{3/17})$, improving on the previous best lower bound of $\Omega(n^{1/7})$ [Bodwin-Hoppenworth FOCS '22]. Our construction completes the…

Data Structures and Algorithms · Computer Science 2024-04-30 Greg Bodwin , Gary Hoppenworth , Virginia Vassilevska Williams , Nicole Wein , Zixuan Xu

We prove that given any $\alpha$-approximation LOCAL algorithm for Minimum Dominating Set (MDS) on planar graphs, we can construct an $f(g)$-round $(3\alpha+1)$-approximation LOCAL algorithm for MDS on graphs embeddable in a given Euler…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-20 Marthe Bonamy , Avinandan Das , Cyril Gavoille , Timothé Picavet , Jukka Suomela , Alexandra Wesolek

We introduce the first index that can be built in $o(n)$ time for a text of length $n$, and can also be queried in $o(q)$ time for a pattern of length $q$. On an alphabet of size $\sigma$, our index uses $O(n\sqrt{\log n\log\sigma})$ bits,…

Data Structures and Algorithms · Computer Science 2019-07-16 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich

Simultaneous Embedding with Fixed Edges (SEFE) is a problem where given $k$ planar graphs we ask whether they can be simultaneously embedded so that the embedding of each graph is planar and common edges are drawn the same. Problems of SEFE…

Discrete Mathematics · Computer Science 2017-12-04 Matěj Konečný , Stanislav Kučera , Jana Novotná , Jakub Pekárek , Martin Smolík , Jakub Tětek , Martin Töpfer

Algorithmic meta-theorems provide an important tool for showing tractability of graph problems on graph classes defined by structural restrictions. While such results are well established for static graphs, corresponding frameworks for…

Discrete Mathematics · Computer Science 2026-02-17 Michelle Döring , Jessica Enright , Laura Larios-Jones , George Skretas

Several `edge-discovery' applications over graph-based data models are known to have worst-case quadratic time complexity in the nodes, even if the discovered edges are sparse. One example is the generic link discovery problem between two…

Artificial Intelligence · Computer Science 2017-07-04 Mayank Kejriwal

The task of finding an extension to a given partial drawing of a graph while adhering to constraints on the representation has been extensively studied in the literature, with well-known results providing efficient algorithms for…

Computational Geometry · Computer Science 2023-02-21 Sujoy Bhore , Robert Ganian , Liana Khazaliya , Fabrizio Montecchiani , Martin Nöllenburg

Blocking flows, introduced by Dinic [2] for network flow, have been used to speed up many augmenting-path type algorithms, especially matching algorithms e.g., [18, 23, 16]. We present an $O(m)$ time algorithm for blocking trails for…

Data Structures and Algorithms · Computer Science 2021-12-09 Harold N. Gabow

Lexicographic depth first search (LexDFS) is a graph search protocol which has already proved to be a powerful tool on cocomparability graphs. Cocomparability graphs have been well studied by investigating their complements (comparability…

Data Structures and Algorithms · Computer Science 2014-04-25 Ekkehard Köhler , Lalla Mouatadid

Thin spanning trees lie at the intersection of graph theory, approximation algorithms, and combinatorial optimization. They are central to the long-standing \emph{thin tree conjecture}, which asks whether every $k$-edge-connected graph…

Data Structures and Algorithms · Computer Science 2025-10-15 Mohit Daga

Given an undirected graph $G$, the problem of deciding whether $G$ admits a simple and proper time-labeling that makes it temporally connected is known to be NP-hard (G\"obel et al., 1991). In this article, we relax this problem and ask…

Data Structures and Algorithms · Computer Science 2026-05-06 Arnaud Casteigts , Michelle Döring , Nils Morawietz

The compressed indexing problem is to preprocess a string $S$ of length $n$ into a compressed representation that supports pattern matching queries. That is, given a string $P$ of length $m$ report all occurrences of $P$ in $S$. We present…

Data Structures and Algorithms · Computer Science 2018-04-12 Anders Roy Christiansen , Mikko Berggren Ettienne

Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…

Data Structures and Algorithms · Computer Science 2016-08-03 Paweł Gawrychowski , Tomasz Kociumaka

We introduce a compressed suffix array representation that, on a text $T$ of length $n$ over an alphabet of size $\sigma$, can be built in $O(n)$ deterministic time, within $O(n\log\sigma)$ bits of working space, and counts the number of…

Data Structures and Algorithms · Computer Science 2017-09-05 J. Ian Munro , Gonzalo Navarro , Yakov Nekrich
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