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Graph Neural Networks (GNNs) have emerged as a prominent research topic in the field of machine learning. Existing GNN models are commonly categorized into two types: spectral GNNs, which are designed based on polynomial graph filters, and…

Machine Learning · Computer Science 2023-09-01 Guanyu Cui , Zhewei Wei

We present AnisoGNNs -- graph neural networks (GNNs) that generalize predictions of anisotropic properties of polycrystals in arbitrary testing directions without the need in excessive training data. To this end, we develop GNNs with a…

Materials Science · Physics 2024-01-30 Guangyu Hu , Marat I. Latypov

This paper reviews graph convolutional neural networks (GCNNs) through the lens of edge-variant graph filters. The edge-variant graph filter is a finite order, linear, and local recursion that allows each node, in each iteration, to weigh…

Machine Learning · Computer Science 2019-03-05 Elvin Isufi , Fernando Gama , Alejandro Ribeiro

Modern sensing and metrology systems now stream terabytes of heterogeneous, high-dimensional (HD) data profiles, images, and dense point clouds, whose natural representation is multi-way tensors. Understanding such data requires regression…

Machine Learning · Computer Science 2025-10-08 Qian Wang , Mohammad N. Bisheh , Kamran Paynabar

Triangular meshes are widely used to represent three-dimensional objects. As a result, many recent works have address the need for geometric deep learning on 3D mesh. However, we observe that the complexities in many of these architectures…

Machine Learning · Computer Science 2024-02-20 Thuan Trang , Nhat Khang Ngo , Daniel Levy , Thieu N. Vo , Siamak Ravanbakhsh , Truong Son Hy

Deep convolutional neural networks (DCNN for short) are vulnerable to examples with small perturbations. Improving DCNN's robustness is of great significance to the safety-critical applications, such as autonomous driving and industry…

Computer Vision and Pattern Recognition · Computer Science 2024-07-25 Jin Ding , Jie-Chao Zhao , Yong-Zhi Sun , Ping Tan , Jia-Wei Wang , Ji-En Ma , You-Tong Fang

Predicting the effect of amino acid mutations on enzyme thermodynamic stability (DDG) is fundamental to protein engineering and drug design. While recent deep learning approaches have shown promise, they often process sequence and structure…

Machine Learning · Computer Science 2025-11-10 Abigail Lin

Message Passing Neural Networks (MPNNs) are a common type of Graph Neural Network (GNN), in which each node's representation is computed recursively by aggregating representations (messages) from its immediate neighbors akin to a…

Machine Learning · Computer Science 2022-04-22 Lingxiao Zhao , Wei Jin , Leman Akoglu , Neil Shah

Message passing neural networks (MPNNs) operate on graphs by exchanging information between neigbouring nodes. MPNNs have been successfully applied to various node-, edge-, and graph-level tasks in areas like molecular science, computer…

Machine Learning · Computer Science 2025-11-05 Lisi Qarkaxhija , Anatol E. Wegner , Ingo Scholtes

Text detection in scenes based on deep neural networks have shown promising results. Instead of using word bounding box regression, recent state-of-the-art methods have started focusing on character bounding box and pixel-level prediction.…

Machine Learning · Computer Science 2020-05-26 Mayank Kumar Singh , Sayan Banerjee , Shubhasis Chaudhuri

Graph Neural Networks (GNNs) have achieved remarkable success across diverse applications, yet they remain limited by oversmoothing and poor performance on heterophilic graphs. To address these challenges, we introduce a novel framework…

Machine Learning · Computer Science 2025-11-19 Cristina López Amado , Tassilo Schwarz , Yu Tian , Renaud Lambiotte

Machine learning models and applications in materials design and discovery typically involve the use of feature representations or "descriptors" followed by a learning algorithm that maps them to a user-desired property of interest. Most…

Graph neural networks (GNNs) extend convolutional neural networks (CNNs) to graph-based data. A question that arises is how much performance improvement does the underlying graph structure in the GNN provide over the CNN (that ignores this…

Machine Learning · Computer Science 2020-12-17 Lavender Yao Jiang , John Shi , Mark Cheung , Oren Wright , José M. F. Moura

Existing network embedding approaches tackle the problem of learning low-dimensional node representations. However, networks can also be seen in the light of edges interlinking pairs of nodes. The broad goal of this paper is to introduce…

Social and Information Networks · Computer Science 2020-11-12 Giuseppe Pirrò

Structural data from Electronic Health Records as complementary information to imaging data for disease prediction. We incorporate novel weighting layer into the Graph Convolutional Networks, which weights every element of structural data…

Machine Learning · Computer Science 2018-05-01 Anees Kazi , Shadi Albarqouni , Karsten Kortuem , Nassir Navab

We propose a tensor neural network ($t$-NN) framework that offers an exciting new paradigm for designing neural networks with multidimensional (tensor) data. Our network architecture is based on the $t$-product (Kilmer and Martin, 2011), an…

Machine Learning · Computer Science 2018-11-19 Elizabeth Newman , Lior Horesh , Haim Avron , Misha Kilmer

Motivated by applications in chemistry and other sciences, we study the expressive power of message-passing neural networks for geometric graphs, whose node features correspond to 3-dimensional positions. Recent work has shown that such…

Machine Learning · Computer Science 2025-02-18 Yonatan Sverdlov , Nadav Dym

Dynamic graphs provide a flexible data abstraction for modelling many sorts of real-world systems, such as transport, trade, and social networks. Graph neural networks (GNNs) are powerful tools allowing for different kinds of prediction and…

Machine Learning · Statistics 2025-03-27 Ed Davis , Ian Gallagher , Daniel John Lawson , Patrick Rubin-Delanchy

We present diffusion-convolutional neural networks (DCNNs), a new model for graph-structured data. Through the introduction of a diffusion-convolution operation, we show how diffusion-based representations can be learned from…

Machine Learning · Computer Science 2016-07-11 James Atwood , Don Towsley

We present a SE(3)-equivariant graph neural network (GNN) approach that directly predicting the formation factor and effective permeability from micro-CT images. FFT solvers are established to compute both the formation factor and effective…