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Due to its higher data density, longevity, energy efficiency, and ease of generating copies, DNA is considered a promising storage technology for satisfying future needs. However, a diverse set of errors including deletions, insertions,…
This thesis concerns sequential-access data compression, i.e., by algorithms that read the input one or more times from beginning to end. In one chapter we consider adaptive prefix coding, for which we must read the input character by…
Binary AIFV codes are lossless codes that generalize the class of instantaneous FV codes. The code uses two code trees and assigns source symbols to incomplete internal nodes as well as to leaves. AIFV codes are empirically shown to attain…
Spectral dimensionality reduction algorithms are widely used in numerous domains, including for recognition, segmentation, tracking and visualization. However, despite their popularity, these algorithms suffer from a major limitation known…
Clarke and Barron have recently shown that the Jeffreys' invariant prior of Bayesian theory yields the common asymptotic (minimax and maximin) redundancy of universal data compression in a parametric setting. We seek a possible analogue of…
Neural networks with Auto-regressive structures, such as Recurrent Neural Networks (RNNs), have become the most appealing structures for acoustic modeling of parametric text to speech synthesis (TTS) in ecent studies. Despite the prominent…
Adaptive variable-length codes associate a variable-length codeword to the symbol being encoded depending on the previous symbols in the input string. This class of codes has been recently presented in [Dragos Trinca, arXiv:cs.DS/0505007]…
This paper addresses fundamental challenges in two-dimensional error correction by constructing optimal codes for \emph{criss-cross deletions}. We consider an $ n \times n $ array $\boldsymbol{X}$ over a $ q $-ary alphabet $\Sigma_q := \{0,…
In this paper, we introduce the notion of recurrence entropy in the context of nonlinear control systems. A set is said to be ($\tau$-)recurrent if every trajectory that starts in the set returns to it (within at most $\tau$ units of time).…
Function-correcting codes, introduced by Lenz, Bitar, Wachter-Zeh, and Yaakobi, protect specific function values of a message rather than the entire message. A central challenge is determining the optimal redundancy -- the minimum…
In this paper we study the redundancy of Huffman codes. In particular, we consider sources for which the probability of one of the source symbols is known. We prove a conjecture of Ye and Yeung regarding the upper bound on the redundancy of…
Optimisation problems in science and engineering typically involve finding the ground state (i.e. the minimum energy configuration) of a cost function with respect to many variables. If the variables are corrupted by noise then this…
We study and propose schemes that map messages onto constant-weight codewords using variable-length prefixes. We provide polynomial-time computable formulas that estimate the average number of redundant bits incurred by our schemes. In…
A Random Access query to a string $T\in [0..\sigma)^n$ asks for the character $T[i]$ at a given position $i\in [0..n)$. In $O(n\log\sigma)$ bits of space, this fundamental task admits constant-time queries. While this is optimal in the…
For a given unconstrained dynamical system, input redundancy has been recently redefined as the existence of distinct inputs producing identical output for the same initial state. By directly referring to signals, this definition readily…
Encoding data as a set of unordered strings is receiving great attention as it captures one of the basic features of DNA storage systems. However, the challenge of constructing optimal redundancy codes for this channel remained elusive. In…
Neural processes (NPs) learn stochastic processes and predict the distribution of target output adaptively conditioned on a context set of observed input-output pairs. Furthermore, Attentive Neural Process (ANP) improved the prediction…
Recurrent neural networks (RNNs) and transformers have been shown to be Turing-complete, but this result assumes infinite precision in their hidden representations, positional encodings for transformers, and unbounded computation time in…
Logarithmic Number Systems (LNS) hold considerable promise in helping reduce the number of bits needed to represent a high dynamic range of real-numbers with finite precision, and also efficiently support multiplication and division.…
Colors and shapes are commonly used to encode categories in multi-class scatterplots. Designers often combine the two channels to create redundant encodings, aiming to enhance class distinctions. However, evidence for the effectiveness of…