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Entropy rate of sequential data-streams naturally quantifies the complexity of the generative process. Thus entropy rate fluctuations could be used as a tool to recognize dynamical perturbations in signal sources, and could potentially be…

Information Theory · Computer Science 2014-03-24 Ishanu Chattopadhyay , Hod Lipson

We study codes that can correct backtracking errors during nanopore sequencing. In this channel, a sequence of length $n$ over an alphabet of size $q$ is being read by a sliding window of length $\ell$, where from each window we obtain only…

Information Theory · Computer Science 2024-08-16 Wenjun Yu , Zuo Ye , Moshe Schwartz

Subword tokenization is a key part of many NLP pipelines. However, little is known about why some tokenizer and hyperparameter combinations lead to better downstream model performance than others. We propose that good tokenizers lead to…

Computation and Language · Computer Science 2023-06-30 Vilém Zouhar , Clara Meister , Juan Luis Gastaldi , Li Du , Mrinmaya Sachan , Ryan Cotterell

We present several algorithms to generate tables for asymmetric numeral systems and prove that they are optimal in terms of discrepancy. In turn, this gives rise to the strongest proven bound on entropy loss. We further give improved…

Information Theory · Computer Science 2025-05-09 Raphael S. Steiner , Mirko De Vita , Endri Bezati

Learning, prediction, and compression are intimately connected: a model that accurately predicts the next symbol in a sequence can be coupled with a source coder to compress that sequence near its information-theoretic limit. When tokenized…

Information Theory · Computer Science 2026-05-05 Vishnu Teja Kunde , Jean-Francois Chamberland , Krishna R. Narayanan , Jamison Ebert

Bounds on the entropy of patterns of sequences generated by independently identically distributed (i.i.d.) sources are derived. A pattern is a sequence of indices that contains all consecutive integer indices in increasing order of first…

Information Theory · Computer Science 2007-07-13 Gil I. Shamir

Tandem duplication is the process of inserting a copy of a segment of DNA adjacent to the original position. Motivated by applications that store data in living organisms, Jain et al. (2017) proposed the study of codes that correct tandem…

Information Theory · Computer Science 2018-01-09 Yeow Meng Chee , Johan Chrisnata , Han Mao Kiah , Tuan Thanh Nguyen

We consider the problem of encoding range minimum queries (RMQs): given an array A[1..n] of distinct totally ordered values, to pre-process A and create a data structure that can answer the query RMQ(i,j), which returns the index containing…

Data Structures and Algorithms · Computer Science 2013-11-19 Pooya Davoodi , Gonzalo Navarro , Rajeev Raman , S. Srinivasa Rao

A new run length encoding algorithm for lossless data compression that exploits positional redundancy by representing data in a two-dimensional model of concentric circles is presented. This visual transform enables detection of runs (each…

Data Structures and Algorithms · Computer Science 2021-07-30 Pranav Venkatram

We study the following one-way asymmetric transmission problem, also a variant of model-based compressed sensing: a resource-limited encoder has to report a small set $S$ from a universe of $N$ items to a more powerful decoder (server). The…

Data Structures and Algorithms · Computer Science 2018-07-30 Alexandr Andoni , Javad Ghaderi , Daniel Hsu , Dan Rubenstein , Omri Weinstein

The efficiency of a code is estimated by its redundancy $R$, while the complexity of a code is estimated by its average delay $\bar N$. In this work we construct word-based codes, for which $R \lesssim \bar N^{-5/3}$. Therefore, word-based…

Information Theory · Computer Science 2007-12-04 G. L. Khodak

As sensing and instrumentation play an increasingly important role in systems controlled over wired and wireless networks, the need to better understand delay-sensitive communication becomes a prime issue. Along these lines, this article…

Information Theory · Computer Science 2021-03-26 Anoosheh Heidarzadeh , Jean-Francois Chamberland , Parimal Parag , Richard D. Wesel

Recent work by Smagloy et al. (ISIT 2020) shows that the redundancy of a single-deletion $s$-substitution correcting code is asymptotically at least $(s+1)\log n+o(\log n)$, where $n$ is the length of the codes. They also provide a…

Information Theory · Computer Science 2020-11-24 Wentu Song , Nikita Polyanskii , Kui Cai , Xuan He

Consider the set of source distributions within a fixed maximum relative entropy with respect to a given nominal distribution. Lossless source coding over this relative entropy ball can be approached in more than one way. A problem…

Information Theory · Computer Science 2011-05-03 Michael B. Baer , Farzad Rezaei , Charalambos D. Charalambous

Datacenter network design plays a critical role in AI training by supporting scaling to thousands of accelerators. An open problem, designing a near-optimal throughput oriented network-topology, routing, and collectives-has not been…

Networking and Internet Architecture · Computer Science 2026-05-28 Conor James Green , Mithuna Thottethodi

The penalty incurred by imposing a finite delay constraint in lossless source coding of a memoryless source is investigated. It is well known that for the so-called block-to-variable and variable-to-variable codes, the redundancy decays at…

Information Theory · Computer Science 2016-11-17 Ofer Shayevitz , Eado Meron , Meir Feder , Ram Zamir

In this paper we consider the problem of encoding data into \textit{repeat-free} sequences in which sequences are imposed to contain any $k$-tuple at most once (for predefined $k$). First, the capacity of the repeat-free constraint are…

Information Theory · Computer Science 2021-06-22 Ohad Elishco , Ryan Gabrys , Eitan Yaakobi , Muriel Médard

A (tandem) duplication of length $ k $ is an insertion of an exact copy of a substring of length $ k $ next to its original position. This and related types of impairments are of relevance in modeling communication in the presence of…

Information Theory · Computer Science 2020-08-13 Mladen Kovačević , Vincent Y. F. Tan

Shannon Entropy is the preeminent tool for measuring the level of uncertainty (and conversely, information content) in a random variable. In the field of communications, entropy can be used to express the information content of given…

Information Theory · Computer Science 2024-11-06 Bill Kay , Audun Myers , Thad Boydston , Emily Ellwein , Cameron Mackenzie , Iliana Alvarez , Erik Lentz

In this work, we present a new version of non-binary VT codes that are capable of correcting a single deletion or single insertion. Moreover, we provide the first known linear time algorithms that encode user messages into these codes of…

Information Theory · Computer Science 2022-12-22 Tuan Thanh Nguyen , Kui Cai , Paul H. Siegel