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Extreme learning machine (ELM) as a neural network algorithm has shown its good performance, such as fast speed, simple structure etc, but also, weak robustness is an unavoidable defect in original ELM for blended data. We present a new…

Machine Learning · Computer Science 2014-09-24 Bo Han , Bo He , Rui Nian , Mengmeng Ma , Shujing Zhang , Minghui Li , Amaury Lendasse

Self-consistency methods are the core technique for improving the reasoning reliability of multimodal large language models (MLLMs). By generating multiple reasoning results through repeated sampling and selecting the best answer via…

Computation and Language · Computer Science 2026-02-05 Xinglong Yang , Zhilin Peng , Zhanzhan Liu , Haochen Shi , Sheng-Jun Huang

Accurately predicting counterfactual user feedback is essential for building effective recommender systems. However, latent confounding bias can obscure the true causal relationship between user feedback and item exposure, ultimately…

Information Retrieval · Computer Science 2025-05-23 Jianfeng Deng , Qingfeng Chen , Debo Cheng , Jiuyong Li , Lin Liu , Shichao Zhang

Graph Neural Networks (GNNs) have recently gained widespread attention as a successful tool for analyzing graph-structured data. However, imperfect graph structure with noisy links lacks enough robustness and may damage graph…

Machine Learning · Computer Science 2025-03-25 Xianlin Zeng , Yufeng Wang , Yuqi Sun , Guodong Guo , Wenrui Ding , Baochang Zhang

Single-cell RNA sequencing (scRNA-seq) enables researchers to analyze gene expression at single-cell level. One important task in scRNA-seq data analysis is unsupervised clustering, which helps identify distinct cell types, laying down the…

Genomics · Quantitative Biology 2023-12-29 Weikang Jiang , Jinxian Wang , Jihong Guan , Shuigeng Zhou

While recent multimodal large language models (MLLMs) have advanced automated ECG interpretation, they still face two key limitations: (1) insufficient multimodal synergy between time series signals and visual ECG representations, and (2)…

Computation and Language · Computer Science 2025-10-21 Xiang Lan , Feng Wu , Kai He , Qinghao Zhao , Shenda Hong , Mengling Feng

Differential co-expression analysis has been widely applied by scientists in understanding the biological mechanisms of diseases. However, the unknown differential patterns are often complicated; thus, models based on simplified parametric…

Methodology · Statistics 2022-01-13 Tianxi Li , Xiwei Tang , Ajay Chatrath

Recent advances in technology have enabled the measurement of RNA levels for individual cells. Compared to traditional tissue-level bulk RNA-seq data, single cell sequencing yields valuable insights about gene expression profiles for…

Applications · Statistics 2019-04-16 Lingxue Zhu , Jing Lei , Bernie Devlin , Kathryn Roeder

Predicting patient features from single-cell data can help identify cellular states implicated in health and disease. Linear models and average cell type expressions are typically favored for this task for their efficiency and robustness,…

Machine Learning · Computer Science 2024-03-11 Jan P. Engelmann , Alessandro Palma , Jakub M. Tomczak , Fabian J. Theis , Francesco Paolo Casale

Electrical Impedance Tomography (EIT) is a non-invasive imaging modality that has earned significant attention for its potential in real-time monitoring of various physiological parameters. Despite its promise, the sensitivity and…

Medical Physics · Physics 2024-06-06 Georgii Kormakov , Nikolay Koshev

Revealing the clonal composition of a single tumor is essential for identifying cell subpopulations with metastatic potential in primary tumors or with resistance to therapies in metastatic tumors. Sequencing technologies provide an…

Genomics · Quantitative Biology 2014-02-07 Francesco Strino , Fabio Parisi , Mariann Micsinai , Yuval Kluger

Recent advances in high-resolution sequencing have paved the way for population-scale analysis in single-cell RNA-sequencing (scRNA-seq) data. scRNA-seq data, in particular, have proven to be extremely powerful in profiling a variety of…

Methodology · Statistics 2025-10-30 Hanxuan Ye , Zachary Qian , Hongzhe Li

Ensemble methods such as bagging and random forests are ubiquitous in various fields, from finance to genomics. Despite their prevalence, the question of the efficient tuning of ensemble parameters has received relatively little attention.…

Methodology · Statistics 2023-12-19 Jin-Hong Du , Pratik Patil , Kathryn Roeder , Arun Kumar Kuchibhotla

The electrocardiogram (ECG) is a key diagnostic tool in cardiovascular health. Single-lead ECG recording is integrated into both clinical-grade and consumer wearables. While self-supervised pretraining of foundation models on unlabeled ECGs…

Machine Learning · Computer Science 2025-12-03 Yuxuan Shu , Peter H. Charlton , Fahim Kawsar , Jussi Hernesniemi , Mohammad Malekzadeh

The rise of single-cell sequencing technologies has revolutionized the exploration of drug resistance, revealing the crucial role of cellular heterogeneity in advancing precision medicine. By building computational models from existing…

Genomics · Quantitative Biology 2025-02-05 Yu-An Huang , Xiyue Cao , Zhu-Hong You , Yue-Chao Li , Xuequn Shang , Zhi-An Huang

Determination of functions for poorly characterized genes is crucial for understanding biological processes and studying human diseases. Functionally associated genes are often gained and lost together through evolution. Therefore…

Applications · Statistics 2018-08-21 Yang Li , Shaoyang Ning , Sarah E. Calvo , Vamsi K. Mootha , Jun S. Liu

Although Large language Model (LLM)-powered information extraction (IE) systems have shown impressive capabilities, current fine-tuning paradigms face two major limitations: high training costs and difficulties in aligning with LLM…

Computation and Language · Computer Science 2025-12-16 Yushen Fang , Jianjun Li , Mingqian Ding , Chang Liu , Xinchi Zou , Wenqi Yang

The accuracy and reliability of gamma-ray bursts (GRBs) as distance indicators are strongly restricted by their systematic errors which are larger than statistical errors. These systematic errors might come from either intrinsic variations…

Cosmology and Nongalactic Astrophysics · Physics 2015-05-28 Ryo Tsutsui , Takashi Nakamura , Daisuke Yonetoku , Toshio Murakami , Yoshiyuki Morihara , Keitaro Takahashi

Bayes' rule describes how to infer posterior beliefs about latent variables given observations, and inference is a critical step in learning algorithms for latent variable models (LVMs). Although there are exact algorithms for inference and…

Machine Learning · Computer Science 2025-09-22 Sacha Sokoloski

Network models provide a powerful framework for analysing single-cell count data, facilitating the characterisation of cellular identities, disease mechanisms, and developmental trajectories. However, uncertainty modeling in unsupervised…

Genomics · Quantitative Biology 2026-04-27 Shanshan Ren , Thomas E. Bartlett , Lina Gerontogianni , Swati Chandna