Related papers: On Generalizations of Pairwise Compatibility Graph…
A graph $G=(V,E)$ is called a pairwise compatibility graph (PCG) if there exists an edge-weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$ such that each leaf $u$ of $T$ corresponds to a vertex $u \in V$ and there…
A graph $G=(V,E)$ with a vertex set $V$ and an edge set $E$ is called a pairwise compatibility graph (PCG, for short) if there are a tree $T$ whose leaf set is $V$, a non-negative edge weight $w$ in $T$, and two non-negative reals…
Pairwise Compatibility Graphs (PCGs) form a tree-metric graph class that originated in phylogeny and has since attracted sustained interest in graph theory. Several natural generalizations have been proposed in order to overcome the…
A graph G=(V,E) is a pairwise compatibility graph (PCG) if there exists an edge-weighted tree T and two non-negative real numbers `d' and `D' such that each leaf `u' of T is a node of V and the edge `(u,v) belongs to E' iff `d <= d_T(u, v)…
A graph $G=(V,E)$ is a pairwise compatibility graph (PCG) if there exists an edge-weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$, $d_{min} \leq d_{max}$, such that each node $u \in V$ is uniquely associated to a…
A graph $G$ is called a pairwise compatibility graph (PCG) if there exists an edge weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$ such that each leaf $l_u$ of $T$ corresponds to a vertex $u \in V$ and there is…
A graph $G$ is called a pairwise compatibility graph (PCG) if there exists an edge-weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$ such that each leaf $l_u$ of $T$ corresponds to a vertex $u \in V$ and there is…
Pairwise compatibility graphs (PCGs) with non-negative integer edge weights recently have been used to describe rare evolutionary events and scenarios with horizontal gene transfer. Here we consider the case that vertices are separated by…
Reconstruction of evolutionary relationships between species is an important topic in the field of computational biology. Pairwise compatibility graphs (PCGs) are used to model such relationships. A graph is a PCG if its edges can be…
A graph $G$ is called a pairwise compatibility graph (PCG, for short) if it admits a tuple $(T,w, d_{\min},d_{\max})$ of a tree $T$ whose leaf set is equal to the vertex set of $G$, a non-negative edge weight $w$, and two non-negative reals…
In this paper we continue the systematic study of Contact graphs of Paths on a Grid (CPG graphs) initiated in [Deniz et al., 2018]. A CPG graph is a graph for which there exists a collection of pairwise interiorly disjoint paths on a grid…
A graph G is a multi-interval PCG if there exist an edge weighted tree T with non-negative real values and disjoint intervals of the non-negative real half-line such that each node of G is uniquely associated to a leaf of T and there is an…
A graph $G$ is said to be the intersection of graphs $G_1,G_2,\ldots,G_k$ if $V(G)=V(G_1)=V(G_2)=\cdots=V(G_k)$ and $E(G)=E(G_1)\cap E(G_2)\cap\cdots\cap E(G_k)$. For a graph $G$, $\mathrm{dim}_{COG}(G)$ (resp. $\mathrm{dim}_{TH}(G)$)…
For $k \geqslant 0$, we define a simple topological graph $G$ (that is, a graph drawn in the plane such that every pair of edges intersect at most once, including endpoints) to be $k$-matching-planar if for every edge $e \in E(G)$, every…
Leaf powers and pairwise compatibility graphs were introduced over twenty years ago as simplified graph models for phylogenetic trees. Despite significant research, several properties of these graph classes remain poorly understood. In this…
In this paper we consider Contact graphs of Paths on a Grid (CPG graphs), i.e. graphs for which there exists a family of interiorly disjoint paths on a grid in one-to-one correspondence with their vertex set such that two vertices are…
Deciding whether a collection of unrooted trees is compatible is a fundamental problem in phylogenetics. Two different graph-theoretic characterizations of tree compatibility have recently been proposed. In one of these, tree compatibility…
Threshold graphs are recursive deterministic network models that have been proposed for describing certain economic and social interactions. One drawback of this graph family is that it has limited generative attachment rules. To mitigate…
A graph $G=(V,E)$ is a star-$k$-PCG if there exists a weight function $w: V \rightarrow R^+$ and $k$ mutually exclusive intervals $I_1, I_2, \ldots I_k$, such that there is an edge $uv \in E$ if and only if $w(u)+w(v) \in \bigcup_i I_i$.…
We consider relations between the size, treewidth, and local crossing number (maximum number of crossings per edge) of graphs embedded on topological surfaces. We show that an $n$-vertex graph embedded on a surface of genus $g$ with at most…