English

Characterizing Star-PCGs

Data Structures and Algorithms 2020-07-23 v1 Discrete Mathematics Combinatorics

Abstract

A graph GG is called a pairwise compatibility graph (PCG, for short) if it admits a tuple (T,w,dmin,dmax)(T,w, d_{\min},d_{\max}) of a tree TT whose leaf set is equal to the vertex set of GG, a non-negative edge weight ww, and two non-negative reals dmindmaxd_{\min}\leq d_{\max} such that GG has an edge between two vertices u,vVu,v\in V if and only if the distance between the two leaves uu and vv in the weighted tree (T,w)(T,w) is in the interval [dmin,dmax][d_{\min}, d_{\max}]. The tree TT is also called a witness tree of the PCG GG. The problem of testing if a given graph is a PCG is not known to be NP-hard yet. To obtain a complete characterization of PCGs is a wide open problem in computational biology and graph theory. In literature, most witness trees admitted by known PCGs are stars and caterpillars. In this paper, we give a complete characterization for a graph to be a star-PCG (a PCG that admits a star as its witness tree), which provides us the first polynomial-time algorithm for recognizing star-PCGs.

Keywords

Cite

@article{arxiv.1804.02895,
  title  = {Characterizing Star-PCGs},
  author = {Mingyu Xiao and Hiroshi Nagamochi},
  journal= {arXiv preprint arXiv:1804.02895},
  year   = {2020}
}

Comments

24 pages and 5 figures

R2 v1 2026-06-23T01:17:44.973Z