Related papers: Towards a comprehensive visualization of structure…
More and more large data collections are gathered worldwide in various IT systems. Many of them possess the networked nature and need to be processed and analysed as graph structures. Due to their size they require very often usage of…
Neighbor embeddings are a family of methods for visualizing complex high-dimensional datasets using $k$NN graphs. To find the low-dimensional embedding, these algorithms combine an attractive force between neighboring pairs of points with a…
We describe a new method called t-ETE for finding a low-dimensional embedding of a set of objects in Euclidean space. We formulate the embedding problem as a joint ranking problem over a set of triplets, where each triplet captures the…
The central goal of this paper is to establish two commonly available dimensionality reduction (DR) methods i.e. t-distributed Stochastic Neighbor Embedding (t-SNE) and Multidimensional Scaling (MDS) in Matlab and to observe their…
In the advent of big data era, interactive visualization of large data sets consisting of M*10^5+ high-dimensional feature vectors of length N (N ~ 10^3+), is an indispensable tool for data exploratory analysis. The state-of-the-art data…
Studying complex real-world phenomena often involves data from multiple views (e.g. sensor modalities or brain regions), each capturing different aspects of the underlying system. Within neuroscience, there is growing interest in…
An attributed hypergraph comprises nodes with attributes and hyperedges that connect varying numbers of nodes. Attributed hypergraph node and hyperedge embedding (AHNEE) maps nodes and hyperedges to compact vectors for use in important…
We present a supervised binary encoding scheme for image retrieval that learns projections by taking into account similarity between classes obtained from output embeddings. Our motivation is that binary hash codes learned in this way…
We propose a unified view on two widely used data visualization techniques: Self-Organizing Maps (SOMs) and Stochastic Neighbor Embedding (SNE). We show that they can both be derived from a common mathematical framework. Leveraging this…
This study presents a hierarchical mining framework for high-dimensional imbalanced data, leveraging a depth graph model to address the inherent performance limitations of conventional approaches in handling complex, high-dimensional data…
How to extract useful insights from data is always a challenge, especially if the data is multidimensional. Often, the data can be organized according to certain hierarchical structure that are stemmed either from data collection process or…
We propose a new dimensionality reduction toolkit designed to address some of the challenges faced by traditional methods like UMAP and tSNE such as loss of global structure and computational efficiency. Built on the JAX framework, DiRe…
Nonlinear dimension reduction (NLDR) techniques such as tSNE, and UMAP provide a low-dimensional representation of high-dimensional data ($p\text{-}D$) by applying a nonlinear transformation. NLDR often exaggerates random patterns. But NLDR…
Many successful methods have been proposed for learning low dimensional representations on large-scale networks, while almost all existing methods are designed in inseparable processes, learning embeddings for entire networks even when only…
Heterogeneous data pose serious challenges to data analysis tasks, including exploration and visualization. Current techniques often utilize dimensionality reductions, aggregation, or conversion to numerical values to analyze heterogeneous…
Adding attributes for nodes to network embedding helps to improve the ability of the learned joint representation to depict features from topology and attributes simultaneously. Recent research on the joint embedding has exhibited a…
Stochastic Neighbor Embedding (SNE) algorithms like UMAP and tSNE often produce visualizations that do not preserve the geometry of noisy and high dimensional data. In particular, they can spuriously separate connected components of the…
The accelerated evolution and explosion of the Internet and social media is generating voluminous quantities of data (on zettabyte scales). Paramount amongst the desires to manipulate and extract actionable intelligence from vast big data…
Nonlinear data visualization using t-distributed stochastic neighbor embedding (t-SNE) enables the representation of complex single-cell transcriptomic landscapes in two or three dimensions to depict biological populations accurately.…
Stochastic neighbor embedding (SNE) and related nonlinear manifold learning algorithms achieve high-quality low-dimensional representations of similarity data, but are notoriously slow to train. We propose a generic formulation of embedding…