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Convergent Cross Mapping (CCM) is a powerful method for detecting causality in coupled nonlinear dynamical systems, providing a model-free approach to capture dynamic causal interactions. Partial Cross Mapping (PCM) was introduced as an…

Machine Learning · Computer Science 2025-02-07 Elise Zhang , François Mirallès , Raphaël Rousseau-Rizzi , Arnaud Zinflou , Di Wu , Benoit Boulet

In this paper, a fast and practical GPU-based implementation of Fuzzy C-Means(FCM) clustering algorithm for image segmentation is proposed. First, an extensive analysis is conducted to study the dependency among the image pixels in the…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-29 Mishal Almazrooie , Mogana Vadiveloo , Rosni Abdullah

Learning the parameters of Partially Observable Markov Decision Processes (POMDPs) from limited data is a significant challenge. We introduce the Fuzzy MAP EM algorithm, a novel approach that incorporates expert knowledge into the parameter…

Machine Learning · Computer Science 2025-11-19 Marco Locatelli , Arjen Hommersom , Roberto Clemens Cerioli , Daniela Besozzi , Fabio Stella

Clustering plays an important role in mining big data both as a modeling technique and a preprocessing step in many data mining process implementations. Fuzzy clustering provides more flexibility than non-fuzzy methods by allowing each data…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-26 Nasser Ghadiri , Meysam Ghaffari , Mohammad Amin Nikbakht

Background and Objective: Deep learning enables tremendous progress in medical image analysis. One driving force of this progress are open-source frameworks like TensorFlow and PyTorch. However, these frameworks rarely address issues…

Image and Video Processing · Electrical Eng. & Systems 2021-04-29 Alain Jungo , Olivier Scheidegger , Mauricio Reyes , Fabian Balsiger

QwaveMPS is an open-source Python library for simulating one-dimensional quantum many-body waveguide systems using matrix product states (MPS). It provides a user-friendly interface for constructing, evolving, and analyzing quantum states…

Quantum Physics · Physics 2026-02-26 Sofia Arranz Regidor , Matthew Kozma , Stephen Hughes

Fuzzing is a popular dynamic program analysis technique used to find vulnerabilities in complex software. Fuzzing involves presenting a target program with crafted malicious input designed to cause crashes, buffer overflows, memory errors,…

Software Engineering · Computer Science 2017-11-15 Mohit Rajpal , William Blum , Rishabh Singh

Flow cytometry (FCM) is an analytic technique that is capable of detecting and recording the emission of fluorescence and light scattering of cells or particles (that are collectively called "events") in a population. A typical FCM…

Quantitative Methods · Quantitative Biology 2020-11-20 Nathan Wong , Daehwan Kim , Zachery Robinson , Connie Huang , Irina M. Conboy

Constant-memory algorithms, also loosely called Markov chains, power the vast majority of probabilistic inference and machine learning applications today. A lot of progress has been made in constructing user-friendly APIs around these…

Computation · Statistics 2021-05-27 Pavel Sountsov , Alexey Radul , Srinivas Vasudevan

Active inference is an account of cognition and behavior in complex systems which brings together action, perception, and learning under the theoretical mantle of Bayesian inference. Active inference has seen growing applications in…

Artificial Intelligence · Computer Science 2022-05-06 Conor Heins , Beren Millidge , Daphne Demekas , Brennan Klein , Karl Friston , Iain Couzin , Alexander Tschantz

Simulation is a foundational tool for the analysis and testing of cyber-physical systems (CPS), underpinning activities such as algorithm development, runtime monitoring, and system verification. As CPS grow in complexity and scale,…

Software Engineering · Computer Science 2025-06-13 Quinn Thibeault , Giulia Pedrielli

This paper presents an open-source Python toolbox called Ensemble Feature Importance (EFI) to provide machine learning (ML) researchers, domain experts, and decision makers with robust and accurate feature importance quantification and more…

The solutions of a system of polynomials in several variables are often needed, e.g.: in the design of mechanical systems, and in phase-space analyses of nonlinear biological dynamics. Reliable, accurate, and comprehensive numerical…

Mathematical Software · Computer Science 2019-07-02 Jasmine Otto , Angus Forbes , Jan Verschelde

In this work, we introduce musif, a Python package that facilitates the automatic extraction of features from symbolic music scores. The package includes the implementation of a large number of features, which have been developed by a team…

Sound · Computer Science 2026-01-21 Ana Llorens , Federico Simonetta , Martín Serrano , Álvaro Torrente

The present study represents "The Fislab package of programs meant to develop the fuzzy regulators in the Scilab environment" in which we present some general issues, usage requirements and the working mode of the Fislab environment. In the…

Mathematical Software · Computer Science 2009-03-26 Simona Apostol

We present qlbm, a Python software package designed to facilitate the development, simulation, and analysis of Quantum Lattice Boltzmann Methods (QBMs). qlbm is a modular framework that introduces a quantum component abstraction hierarchy…

Quantum Physics · Physics 2025-12-23 Călin A. Georgescu , Merel A. Schalkers , Matthias Möller

$\textit{Pymc-learn}$ is a Python package providing a variety of state-of-the-art probabilistic models for supervised and unsupervised machine learning. It is inspired by $\textit{scikit-learn}$ and focuses on bringing probabilistic machine…

Machine Learning · Statistics 2018-11-05 Daniel Emaasit

The exponential growth of complex data demands fully automatic clustering. Gaussian mixture models (GMMs) provide uncertainty-aware grouping but often require expertise to specify hyperparameters, e.g., component count and covariance…

Machine Learning · Computer Science 2025-09-10 Tingshan Liu , Thomas L. Athey , Benjamin D. Pedigo , Joshua T. Vogelstein

Scientific inference is often undermined by the vast but rarely explored "multiverse" of defensible modelling choices, which can generate results as variable as the phenomena under study. We introduce RobustiPy, an open-source Python…

Methodology · Statistics 2026-05-20 Daniel Valdenegro , Jiani Yan , Duiyi Dai , Charles Rahal

Chain event graphs (CEGs) are a recent family of probabilistic graphical models that generalise the popular Bayesian networks (BNs) family. Crucially, unlike BNs, a CEG is able to embed, within its graph and its statistical model,…

Methodology · Statistics 2022-11-22 Gareth Walley , Aditi Shenvi , Peter Strong , Katarzyna Kobalczyk
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