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We develop lagged Metropolis-Hastings walk for sampling from simple undirected graphs according to given stationary sampling probabilities. We explain how to apply the technique together with designed graphs for sampling of units-in-space.…

Methodology · Statistics 2022-05-16 Li-Chun Zhang

Disease transmission is studied through disciplines like epidemiology, applied mathematics, and statistics. Mathematical simulation models for transmission have implications in solving public and personal health challenges. The SIR model…

Populations and Evolution · Quantitative Biology 2022-01-04 R. Jayatilaka , R. Patel , M. Brar , Y. Tang , N. M. Jisrawi , F. Chishtie , J. Drozd , S. R. Valluri

Stochastic differential equations characterized by uncertainty are effective in modelling virus dynamics and provide an alternative to traditional deterministic models. Epidemic models are inevitably subjected to the randomness within the…

Dynamical Systems · Mathematics 2024-08-12 Bishal Chhetri , B. V. Ratish Kumar

A molecular and cellular understanding of how SARS-CoV-2 variably infects and causes severe COVID-19 remains a bottleneck in developing interventions to end the pandemic. We sought to use deep learning to study the biology of SARS-CoV-2…

Machine Learning · Computer Science 2020-12-16 Arijit Sehanobish , Neal G. Ravindra , David van Dijk

This research paper presents an analysis of the propagation of the SARS-CoV-2, or other similar pathogens, in a hospital isolation room using computational fluid dynamics (CFD) and Lagrangian Coherent Structures (LCS). The study…

We present in this paper a model of the transport of human respiratory particles on a Charlotte Area Transit System (CATS) bus to examine the efficacy of interventions to limit exposure to SARS-CoV-2, the virus that causes COVID-19. The…

We propose a simple model of spreading of some infection in an originally healthy population which is different from other models existing in the literature. In particular, we use an operator technique which allows us to describe in a…

Populations and Evolution · Quantitative Biology 2020-10-29 F. Bagarello , F. Gargano , F. Roccati

In the present paper, we model the cumulative number of persons reported to be infected by the SARS-CoV-2 virus, in a country or a region, by a sum of logistic functions. For a given logistic function, using Eulerian numbers, we find the…

Populations and Evolution · Quantitative Biology 2023-07-07 Grzegorz Rzadkowski

Models of epidemics over networks have become popular, as they describe the impact of individual behavior on infection spread. However, they come with high computational complexity, which constitutes a problem in case large-scale scenarios…

Systems and Control · Electrical Eng. & Systems 2026-02-10 Davide Zorzenon , Fabio Molinari , Joerg Raisch

In this paper, we present stochastic synchronous cellular automaton defined on a square lattice. The automaton rules are based on the SEIR (susceptible $\to$ exposed $\to$ infected $\to$ recovered) model with probabilistic parameters…

Cellular Automata and Lattice Gases · Physics 2022-06-22 Szymon Biernacki , Krzysztof Malarz

A pipeline to evaluate the evolution of viral dynamics based on a new model-driven approach has been developed in the present study. The proposed methods exploit real data and the multiscale structure of the infection dynamics to provide…

Populations and Evolution · Quantitative Biology 2025-11-25 Andrea Bondesan , Antonio Piralla , Elena Ballante , Antonino Maria Guglielmo Pitrolo , Silvia Figini , Fausto Baldanti , Mattia Zanella

Urban mobility forecast and analysis can be addressed through grid-based and graph-based models. However, graph-based representations have the advantage of more realistically depicting the mobility networks and being more robust since they…

Discrete Mathematics · Computer Science 2023-10-11 Rafael Martínez Márquez , Giuseppe Patanè

The pandemic linked to COVID-19 infection represents an unprecedented clinical and healthcare challenge for many medical researchers attempting to prevent its worldwide spread. This pandemic also represents a major challenge for…

Adaptive networks model social, physical, technical, or biological systems as attributed graphs evolving at the level of both their topology and data. They are naturally described by graph transformation, but the majority of authors take an…

Discrete Mathematics · Computer Science 2021-12-22 Nicolas Behr , Bello Shehu Bello , Sebastian Ehmes , Reiko Heckel

By means of the asynchronous cellular automata algorithm we study stationary states and spatial patterning in an $SIS$ model, in which the individuals' are attached to the vertices of a graph and their mobility is mimicked by varying the…

Populations and Evolution · Quantitative Biology 2016-06-22 J. M. Ilnytskyi , Y. Kozitsky , H. I. Ilnytskyi , O. Haiduchok

This paper focuses on the analysis of a stochastic SAIRS-type epidemic model that explicitly incorporates the roles of asymptomatic and symptomatic infectious individuals in disease transmission dynamics. Asymptomatic carriers, often…

Populations and Evolution · Quantitative Biology 2025-01-14 Brahim Boukanjime , Mohamed El Fatini , Mohamed Maama

A comprehensive retrospective analysis of public health interventions, such as large scale testing, quarantining, and contact tracing, can help identify mechanisms most effective in mitigating COVID-19. We investigate China based SARS-CoV-2…

Machine Learning · Computer Science 2025-12-30 Zhou Yang , Edward Dougherty , Chen Zhang , Zhenhe Pan , Fang Jin

The rapid worldwide spread of the severe acute respiratory syndrome (SARS) demonstrated the potential threat an infectious disease poses in a closely interconnected and interdependent world. Here we introduce a probabilistic model which…

Disordered Systems and Neural Networks · Physics 2009-11-10 L. Hufnagel , D. Brockmann , T. Geisel

In this study, we develop the mathematical model to understand the coupling between the spreading dynamics of infectious diseases and the mobility dynamics through urban transportation systems. We first describe the mobility dynamics of the…

Physics and Society · Physics 2020-05-12 Xinwu Qian , Satish V. Ukkusuri

While many epidemiological models have being proposed to understand and handle COVID-19, too little has been invested to understand how the virus replicates in the human body and potential antiviral can be used to control the replication…