Related papers: An Improved Algorithm for The $k$-Dyck Edit Distan…
The equidistant subsequence pattern matching problem is considered. Given a pattern string $P$ and a text string $T$, we say that $P$ is an \emph{equidistant subsequence} of $T$ if $P$ is a subsequence of the text such that consecutive…
An ordered labeled tree is a tree in which the nodes are labeled and the left-to-right order among siblings is relevant. The edit distance between two ordered labeled trees is the minimum cost of changing one tree into the other through a…
Given an undirected $n$-vertex graph and $k$ pairs of terminal vertices $(s_1,t_1), \ldots, (s_k,t_k)$, the $k$-Disjoint Shortest Paths ($k$-DSP)-problem asks whether there are $k$ pairwise vertex-disjoint paths $P_1,\ldots, P_k$ such that…
Computing optimal transport (OT) distances such as the earth mover's distance is a fundamental problem in machine learning, statistics, and computer vision. In this paper, we study the problem of approximating the general OT distance…
Given an edge-weighted graph, how many minimum $k$-cuts can it have? This is a fundamental question in the intersection of algorithms, extremal combinatorics, and graph theory. It is particularly interesting in that the best known bounds…
We present Optimal Completion Distillation (OCD), a training procedure for optimizing sequence to sequence models based on edit distance. OCD is efficient, has no hyper-parameters of its own, and does not require pretraining or joint…
Given a set of $n$ points in $d$ dimensions, the Euclidean $k$-means problem (resp. the Euclidean $k$-median problem) consists of finding $k$ centers such that the sum of squared distances (resp. sum of distances) from every point to its…
Although real-world text datasets, such as DNA sequences, are far from being uniformly random, average-case string searching algorithms perform significantly better than worst-case ones in most applications of interest. In this paper, we…
We present a new approximation algorithm for the treewidth problem which finds an upper bound on the treewidth and constructs a corresponding tree decomposition as well. Our algorithm is a faster variation of Reed's classical algorithm. For…
An influential result by Dor, Halperin, and Zwick (FOCS 1996, SICOMP 2000) implies an algorithm that can compute approximate shortest paths for all vertex pairs in $\tilde{O}(n^{2+O\left(\frac{1}{k}\right )})$ time, ensuring that the output…
Knapsack and Partition are two important additive problems whose fine-grained complexities in the $(1-\varepsilon)$-approximation setting are not yet settled. In this work, we make progress on both problems by giving improved algorithms. -…
In this paper we initiate a systematic study of exact algorithms for well-known clustering problems, namely $k$-Median and $k$-Means. In $k$-Median, the input consists of a set $X$ of $n$ points belonging to a metric space, and the task is…
We introduce a new distance measure for comparing polygonal chains: the $k$-Fr\'echet distance. As the name implies, it is closely related to the well-studied Fr\'echet distance but detects similarities between curves that resemble each…
We investigate the parameterized complexity of the graph editing problem called Editing to a Graph with a Given Degree Sequence, where the aim is to obtain a graph with a given degree sequence \sigma by at most k vertex or edge deletions…
In the usual trace reconstruction problem, the goal is to exactly reconstruct an unknown string of length $n$ after it passes through a deletion channel many times independently, producing a set of traces (i.e., random subsequences of the…
We consider the classical tree edit distance between ordered labeled trees, which is defined as the minimum-cost sequence of node edit operations that transform one tree into another. The state-of-the-art solutions for the tree edit…
We study the problem of computing the Fr\'echet distance between two polygonal curves under transformations. First, we consider translations in the Euclidean plane. Given two curves $\pi$ and $\sigma$ of total complexity $n$ and a threshold…
We study subtrajectory clustering under the Fr\'echet distance. Given one or more trajectories, the task is to split the trajectories into several parts, such that the parts have a good clustering structure. We approach this problem via a…
Given an undirected graph and a size parameter $k$, the Densest $k$-Subgraph (D$k$S) problem extracts the subgraph on $k$ vertices with the largest number of induced edges. While D$k$S is NP--hard and difficult to approximate, penalty-based…
The algorithmic tasks of computing the Hamming distance between a given pattern of length $m$ and each location in a text of length $n$ is one of the most fundamental algorithmic tasks in string algorithms. Unfortunately, there is evidence…