Related papers: Complete characterization of the minimal-ABC trees
Given a connected, undirected graph whose edges are labelled (or coloured), the minimum labelling spanning tree (MLST) problem seeks a spanning tree whose edges have the smallest number of distinct labels (or colours). In recent work, the…
This paper describes a generalization of previous methods for constructing tree-structured belief network with hidden variables. The major new feature of the described method is the ability to produce a tree decomposition even when there…
Pairwise ordered tree alignment are combinatorial objects that appear in RNA secondary structure comparison. However, the usual representation of tree alignments as supertrees is ambiguous, i.e. two distinct supertrees may induce identical…
The minimum spanning tree (MST) is a combinatorial optimization problem: given a connected graph with a real weight ("cost") on each edge, find the spanning tree that minimizes the sum of the total cost of the occupied edges. We consider…
The first geometric-arithmetic (GA) index and atom-bond connectivity (ABC) index are molecular structure descriptors which play a significant role in quantitative structure-property relationship (QSPR) and quantitative structure-activity…
Best match graphs (BMG) are a key intermediate in graph-based orthology detection and contain a large amount of information on the gene tree. We provide a near-cubic algorithm to determine whether a BMG is binary-explainable, i.e., whether…
Consider the $d$ dimensional lattice $\mathbb{Z}^d$ where each vertex is open or closed with probability $p$ or $1-p$ respectively. An open vertex $\mathbb{u} := (\mathbb{u}(1), \mathbb{u}(2),...,\mathbb{u}(d))$ is connected by an edge to…
A classical problem in phylogenetic tree analysis is to decide whether there is a phylogenetic tree $T$ that contains all information of a given collection $\cP$ of phylogenetic trees. If the answer is "yes" we say that $\cP$ is compatible…
A characterization of the tree $T^*$ such that $\mathrm{BP}(T^*)=\overleftrightarrow{\mathrm{DFUDS}(T)}$, the reversal of $\mathrm{DFUDS}(T)$ is given. An immediate consequence is a rigorous characterization of the tree $\hat{T}$ such that…
We derive sharp lower bounds for the first and the second Zagreb indices ($M_1$ and $M_2$ respectively) for trees and chemical trees with the given number of pendent vertices and find optimal trees. $M_1$ is minimized by a tree with all…
Inference of species networks from genomic data under the Network Multispecies Coalescent Model is currently severely limited by heavy computational demands. It also remains unclear how complicated networks can be for consistent inference…
This paper investigates the a-posteriori analysis of Branch-and-Bound~(BB) trees to extract structural information about the feasible region of mixed-binary linear programs. We introduce three novel outer approximations of the feasible…
Given an n-vertex graph G=(V,E) and a set R \subseteq {{x,y} | x,y \in V} of requests, we consider to assign a set of edges to each vertex in G so that for every request {u, v} in R the union of the edge sets assigned to u and v contains a…
There is a common problem of operating on hash values of elements of some database. In this paper there will be analyzed informational content of such general task and how to practically approach such found lower boundaries. Minimal prefix…
We introduce a variant of the vertex-distinguishing edge coloring problem, where each edge is assigned a subset of colors. The label of a vertex is the union of the sets of colors on edges incident to it. In this paper we investigate the…
A subset of vertices of a graph is minimal if, within all subsets of the same size, its vertex boundary is minimal. We give a complete, geometric characterization of minimal sets for the planar integer lattice X. Our characterization…
Consensus maximization is widely used for robust fitting in computer vision. However, solving it exactly, i.e., finding the globally optimal solution, is intractable. A* tree search, which has been shown to be fixed-parameter tractable, is…
We introduce evolving networks where new vertices preferentially connect to the more central parts of a network. This makes such networks compact. Finite networks grown under the preferential compactness mechanism have complex…
A linear forest is a collection of vertex-disjoint paths. The Linear Arboricity Conjecture states that every graph of maximum degree $\Delta$ can be decomposed into at most $\lceil(\Delta+1)/2\rceil$ linear forests. We prove that $\Delta/2…
The Steiner Tree problem is a classical problem in combinatorial optimization: the goal is to connect a set $T$ of terminals in a graph $G$ by a tree of minimum size. Karpinski and Zelikovsky (1996) studied the $\delta$-dense version of…